Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5980 | 5' | -51.5 | NC_001806.1 | + | 41850 | 0.68 | 0.949009 |
Target: 5'- -----cGGGCGcguacGUGCGAGCGCgcaGGu -3' miRNA: 3'- aauaauCCCGCuu---CACGCUCGUGa--CC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 119050 | 0.68 | 0.95329 |
Target: 5'- ---gUGGGGCucGggG-GCGAGCugUGc -3' miRNA: 3'- aauaAUCCCG--CuuCaCGCUCGugACc -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 2835 | 0.67 | 0.964658 |
Target: 5'- ----gGGGGCGugGAGgggggcGCGGGCGCgGGg -3' miRNA: 3'- aauaaUCCCGC--UUCa-----CGCUCGUGaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 95400 | 0.67 | 0.964658 |
Target: 5'- ----gGGGGCGggG-GCGAGgACg-- -3' miRNA: 3'- aauaaUCCCGCuuCaCGCUCgUGacc -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 25919 | 0.67 | 0.967973 |
Target: 5'- -----cGGGCGgcGUGCGcGCGCgcggcGGg -3' miRNA: 3'- aauaauCCCGCuuCACGCuCGUGa----CC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 141327 | 0.67 | 0.967973 |
Target: 5'- ----aGGGGCGAcgGGUGCGAaaacuugaggacGCAaUGGa -3' miRNA: 3'- aauaaUCCCGCU--UCACGCU------------CGUgACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 95953 | 0.67 | 0.967973 |
Target: 5'- ----gGGGGCGggGggcuCGGGUGCUGa -3' miRNA: 3'- aauaaUCCCGCuuCac--GCUCGUGACc -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 2660 | 0.67 | 0.967973 |
Target: 5'- ----cAGGGCGgcGgccGCGGGCgccgccgugugGCUGGg -3' miRNA: 3'- aauaaUCCCGCuuCa--CGCUCG-----------UGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 12657 | 0.67 | 0.967973 |
Target: 5'- ----aAGGGCu-GGUGCGAGgacgGCUGGu -3' miRNA: 3'- aauaaUCCCGcuUCACGCUCg---UGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 26829 | 0.67 | 0.97393 |
Target: 5'- -----cGGGCGggGaGgGGGCGCcGGa -3' miRNA: 3'- aauaauCCCGCuuCaCgCUCGUGaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 94270 | 0.67 | 0.97393 |
Target: 5'- -----uGGcGCGAGG-GCGAGCGgcucCUGGg -3' miRNA: 3'- aauaauCC-CGCUUCaCGCUCGU----GACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 45319 | 0.67 | 0.97393 |
Target: 5'- ------cGGCGAGGaggGCGGGCGCgaugGGa -3' miRNA: 3'- aauaaucCCGCUUCa--CGCUCGUGa---CC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 151197 | 0.67 | 0.975018 |
Target: 5'- ----gAGGGCGAGGcGCGgcggaaggcggaaggGGCGCgagGGg -3' miRNA: 3'- aauaaUCCCGCUUCaCGC---------------UCGUGa--CC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 33652 | 0.67 | 0.976586 |
Target: 5'- ----gGGGGgGggGUgucGCGGGCcgucuGCUGGc -3' miRNA: 3'- aauaaUCCCgCuuCA---CGCUCG-----UGACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 83817 | 0.67 | 0.976586 |
Target: 5'- ----gGGGGCGggGU-CG-GCGCgGGa -3' miRNA: 3'- aauaaUCCCGCuuCAcGCuCGUGaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 99671 | 0.66 | 0.978802 |
Target: 5'- ---cUGGGGCauacgggGGAGUGgGGGCAUgGGa -3' miRNA: 3'- aauaAUCCCG-------CUUCACgCUCGUGaCC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 20334 | 0.66 | 0.979038 |
Target: 5'- aUGggGGGGCGGcaAG-GCGGGCGgcccUUGGg -3' miRNA: 3'- aAUaaUCCCGCU--UCaCGCUCGU----GACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 82227 | 0.66 | 0.979038 |
Target: 5'- ----gGGGGCGuuGUGUGGGCGaUGa -3' miRNA: 3'- aauaaUCCCGCuuCACGCUCGUgACc -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 20681 | 0.66 | 0.979038 |
Target: 5'- ----cGGGGCGggGU-CGuGCAUaaUGGa -3' miRNA: 3'- aauaaUCCCGCuuCAcGCuCGUG--ACC- -5' |
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5980 | 5' | -51.5 | NC_001806.1 | + | 110980 | 0.66 | 0.979038 |
Target: 5'- -cGUUAcguGGGCG--GUGCGGGCGCUc- -3' miRNA: 3'- aaUAAU---CCCGCuuCACGCUCGUGAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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