miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 25311 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25345 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25379 0.66 0.988542
Target:  5'- ----gGGGGCGAGGgGCGGGagg-GGg -3'
miRNA:   3'- aauaaUCCCGCUUCaCGCUCgugaCC- -5'
5980 5' -51.5 NC_001806.1 + 25413 0.66 0.984142
Target:  5'- ----gGGGGCGAGGggcggugguggugcGCGGGCGCccccGGa -3'
miRNA:   3'- aauaaUCCCGCUUCa-------------CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 25534 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25566 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25598 0.66 0.988542
Target:  5'- ----gAGGGCuGggGccgGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25630 0.66 0.988542
Target:  5'- ----gAGGGCuGggGcugGgGAGgGCUGGg -3'
miRNA:   3'- aauaaUCCCG-CuuCa--CgCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 25919 0.67 0.967973
Target:  5'- -----cGGGCGgcGUGCGcGCGCgcggcGGg -3'
miRNA:   3'- aauaauCCCGCuuCACGCuCGUGa----CC- -5'
5980 5' -51.5 NC_001806.1 + 26829 0.67 0.97393
Target:  5'- -----cGGGCGggGaGgGGGCGCcGGa -3'
miRNA:   3'- aauaauCCCGCuuCaCgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 31365 0.77 0.563648
Target:  5'- uUUGUggggAGGGgGggGU-CGGGCGCUGGg -3'
miRNA:   3'- -AAUAa---UCCCgCuuCAcGCUCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 33652 0.67 0.976586
Target:  5'- ----gGGGGgGggGUgucGCGGGCcgucuGCUGGc -3'
miRNA:   3'- aauaaUCCCgCuuCA---CGCUCG-----UGACC- -5'
5980 5' -51.5 NC_001806.1 + 34001 0.66 0.985256
Target:  5'- ----aGGGGCGggG-GCGuGgGCgGGg -3'
miRNA:   3'- aauaaUCCCGCuuCaCGCuCgUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 34304 0.71 0.877593
Target:  5'- --uUUAGcGGCGggGggcgGCGcgccggacggGGCGCUGGa -3'
miRNA:   3'- aauAAUC-CCGCuuCa---CGC----------UCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 41850 0.68 0.949009
Target:  5'- -----cGGGCGcguacGUGCGAGCGCgcaGGu -3'
miRNA:   3'- aauaauCCCGCuu---CACGCUCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 42638 0.66 0.981295
Target:  5'- ----cGGcGGCGucgcguccGGUGCGGGgGCUGGc -3'
miRNA:   3'- aauaaUC-CCGCu-------UCACGCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 45319 0.67 0.97393
Target:  5'- ------cGGCGAGGaggGCGGGCGCgaugGGa -3'
miRNA:   3'- aauaaucCCGCUUCa--CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 45347 0.71 0.86219
Target:  5'- ----gGGGGCGcgcGGUGCGAGacccaaaaCACUGGc -3'
miRNA:   3'- aauaaUCCCGCu--UCACGCUC--------GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 45511 0.66 0.985256
Target:  5'- ---gUGGGGUGAggGGUGgGGGUGgaGGg -3'
miRNA:   3'- aauaAUCCCGCU--UCACgCUCGUgaCC- -5'
5980 5' -51.5 NC_001806.1 + 49859 0.66 0.986978
Target:  5'- ----cAGGGCGAGGcGUuGGC-CUGGu -3'
miRNA:   3'- aauaaUCCCGCUUCaCGcUCGuGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.