miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 151097 0.67 0.481878
Target:  5'- -nCGCGGGGGuCGCGggggUCgCgGGGGGCUc -3'
miRNA:   3'- uuGUGUCCCCuGCGU----GG-GgCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 41731 0.67 0.481878
Target:  5'- gGGCGCAaacGcGGGC-CACCCgCGGGGGaCCa -3'
miRNA:   3'- -UUGUGUc--C-CCUGcGUGGG-GCCCCC-GG- -5'
5981 3' -64.5 NC_001806.1 + 91191 0.67 0.481878
Target:  5'- cAACGCcgucGGGGcguaccugGCGCGCgCCgcgggacucguGGGGGCCa -3'
miRNA:   3'- -UUGUGu---CCCC--------UGCGUGgGG-----------CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 99728 0.67 0.481878
Target:  5'- gGGCGCugugugguGGGGGGCGauacacgGCCuCCGGGGGaCa -3'
miRNA:   3'- -UUGUG--------UCCCCUGCg------UGG-GGCCCCCgG- -5'
5981 3' -64.5 NC_001806.1 + 66810 0.67 0.47293
Target:  5'- -uCACGGccgagcGGGGC-CGgCCCGGGuGGCCg -3'
miRNA:   3'- uuGUGUC------CCCUGcGUgGGGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 118003 0.67 0.47293
Target:  5'- gAACGCGGGauccacguacACGUACaaaUCGGGGGCCa -3'
miRNA:   3'- -UUGUGUCCcc--------UGCGUGg--GGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 3553 0.67 0.47293
Target:  5'- gGGCGCGGcGGACaGcCGCCCCaGGGcGGCg -3'
miRNA:   3'- -UUGUGUCcCCUG-C-GUGGGG-CCC-CCGg -5'
5981 3' -64.5 NC_001806.1 + 129871 0.67 0.47293
Target:  5'- -----cGGGGACGUgACCaCGuGGGGCCa -3'
miRNA:   3'- uuguguCCCCUGCG-UGGgGC-CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147382 0.67 0.47293
Target:  5'- cGGCGCgaggGGGGGACGCGuggaCUGGGGGg- -3'
miRNA:   3'- -UUGUG----UCCCCUGCGUgg--GGCCCCCgg -5'
5981 3' -64.5 NC_001806.1 + 151524 0.67 0.47204
Target:  5'- --uGCGGuuGGGACgGCGCccgugggCCCGGGcGGCCg -3'
miRNA:   3'- uugUGUC--CCCUG-CGUG-------GGGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 145631 0.67 0.464067
Target:  5'- gGAUACGGaGGaGugGCGggUgCCGGGGGaCCg -3'
miRNA:   3'- -UUGUGUC-CC-CugCGU--GgGGCCCCC-GG- -5'
5981 3' -64.5 NC_001806.1 + 22721 0.67 0.464067
Target:  5'- -cCGCGGGGGGCGacgACCCCGac-GCCg -3'
miRNA:   3'- uuGUGUCCCCUGCg--UGGGGCcccCGG- -5'
5981 3' -64.5 NC_001806.1 + 119612 0.67 0.461425
Target:  5'- --gGCGGGGGcCGCuuuguggccccagcGCCCCacgggcccGGGGGCg -3'
miRNA:   3'- uugUGUCCCCuGCG--------------UGGGG--------CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 9775 0.67 0.455291
Target:  5'- gGGCGCGuGGGGAgGgGCCCCgacgugcgggugGGuGGGCUc -3'
miRNA:   3'- -UUGUGU-CCCCUgCgUGGGG------------CC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 24666 0.67 0.455291
Target:  5'- uGGCGCuGGGGcgcgaggcgguGCGCGCcggCCCGGcccgguggcgcGGGCCg -3'
miRNA:   3'- -UUGUGuCCCC-----------UGCGUG---GGGCC-----------CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 25515 0.67 0.455291
Target:  5'- gAGCGC--GGGACGCGCCggGGaGGGCUg -3'
miRNA:   3'- -UUGUGucCCCUGCGUGGggCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 28220 0.67 0.455291
Target:  5'- gGGCGCcauauuGGGGGGCGcCAUgUUGGGGGaCCc -3'
miRNA:   3'- -UUGUG------UCCCCUGC-GUGgGGCCCCC-GG- -5'
5981 3' -64.5 NC_001806.1 + 52937 0.67 0.455291
Target:  5'- -cCACGgguguGGGGACcCGCCCCGGaGGGa- -3'
miRNA:   3'- uuGUGU-----CCCCUGcGUGGGGCC-CCCgg -5'
5981 3' -64.5 NC_001806.1 + 88934 0.67 0.455291
Target:  5'- uGACGguGGGGuuGaACCCCGccGGGGCg -3'
miRNA:   3'- -UUGUguCCCCugCgUGGGGC--CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 151029 0.67 0.455291
Target:  5'- cAC-CAGGuGGCGCACCCggaCGuGGGGCg -3'
miRNA:   3'- uUGuGUCCcCUGCGUGGG---GC-CCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.