miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 109540 0.66 0.518444
Target:  5'- gAGC-CGGGGGAggUGCGCCUgGGccaGGGCg -3'
miRNA:   3'- -UUGuGUCCCCU--GCGUGGGgCC---CCCGg -5'
5981 3' -64.5 NC_001806.1 + 144975 0.66 0.518444
Target:  5'- cGGCcCGGGGccccGGCGgACCCaaGGGGCCc -3'
miRNA:   3'- -UUGuGUCCC----CUGCgUGGGgcCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 25422 0.66 0.518444
Target:  5'- gGGCGguGGuggugcgcGGGCGC-CCCCGGaGGGUUu -3'
miRNA:   3'- -UUGUguCC--------CCUGCGuGGGGCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 114080 0.66 0.509193
Target:  5'- -uCGCGGGGccgcuGCuGCACCgCGGGGGUUc -3'
miRNA:   3'- uuGUGUCCCc----UG-CGUGGgGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 59048 0.66 0.509193
Target:  5'- -cCACGGGGGAgGC-----GGGGGCCa -3'
miRNA:   3'- uuGUGUCCCCUgCGuggggCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 51124 0.66 0.509193
Target:  5'- cGCACgugucGGGGaGGCGCGCgaCCGGGcugggaGGCCc -3'
miRNA:   3'- uUGUG-----UCCC-CUGCGUGg-GGCCC------CCGG- -5'
5981 3' -64.5 NC_001806.1 + 117632 0.66 0.509193
Target:  5'- gAGCAggaaaaAGGGGuacagcacCGCGCuCCCGGGaGGCUc -3'
miRNA:   3'- -UUGUg-----UCCCCu-------GCGUG-GGGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 99581 0.66 0.509193
Target:  5'- cGGCGgGGGGGaACGCggGCUCCGucgguagaGGGGCg -3'
miRNA:   3'- -UUGUgUCCCC-UGCG--UGGGGC--------CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 59171 0.66 0.500013
Target:  5'- gGACGCggAGGGGGCGUAUgCCGcugcgaggguGGGGUUu -3'
miRNA:   3'- -UUGUG--UCCCCUGCGUGgGGC----------CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 138834 0.66 0.500013
Target:  5'- aAGCAacuGGGGcCGCGggaCGGGGGCCc -3'
miRNA:   3'- -UUGUgu-CCCCuGCGUgggGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 22665 0.66 0.500013
Target:  5'- cGGCGCcgcGGGGAuccuCGcCGCCCUGGGGcggcuguccGCCg -3'
miRNA:   3'- -UUGUGu--CCCCU----GC-GUGGGGCCCC---------CGG- -5'
5981 3' -64.5 NC_001806.1 + 99690 0.66 0.500013
Target:  5'- gGGgGCAuGGGACGCcggACCCUGGGGaggaCCg -3'
miRNA:   3'- -UUgUGUcCCCUGCG---UGGGGCCCCc---GG- -5'
5981 3' -64.5 NC_001806.1 + 9938 0.66 0.49454
Target:  5'- aGAUACAggccggaguguuguGGGGACGCGUCCCGgaacuccaauugacGGaGGCCg -3'
miRNA:   3'- -UUGUGU--------------CCCCUGCGUGGGGC--------------CC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 3053 0.66 0.490907
Target:  5'- --aGCAGGGGGCGCagGCUCUGGuuGUCa -3'
miRNA:   3'- uugUGUCCCCUGCG--UGGGGCCccCGG- -5'
5981 3' -64.5 NC_001806.1 + 121408 0.66 0.490907
Target:  5'- --aGCcGGGcGCGUGCugcgccuugggCCCGGGGGCCu -3'
miRNA:   3'- uugUGuCCCcUGCGUG-----------GGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 134232 0.66 0.490907
Target:  5'- cACGCagucggagcgGGGGGGCG-GCCCCGGcaGCCg -3'
miRNA:   3'- uUGUG----------UCCCCUGCgUGGGGCCccCGG- -5'
5981 3' -64.5 NC_001806.1 + 37917 0.67 0.48548
Target:  5'- -uCGCcauGGGGGCGCcggggccguccguccACCCCGccccGGGGCg -3'
miRNA:   3'- uuGUGu--CCCCUGCG---------------UGGGGC----CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 91191 0.67 0.481878
Target:  5'- cAACGCcgucGGGGcguaccugGCGCGCgCCgcgggacucguGGGGGCCa -3'
miRNA:   3'- -UUGUGu---CCCC--------UGCGUGgGG-----------CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 41731 0.67 0.481878
Target:  5'- gGGCGCAaacGcGGGC-CACCCgCGGGGGaCCa -3'
miRNA:   3'- -UUGUGUc--C-CCUGcGUGGG-GCCCCC-GG- -5'
5981 3' -64.5 NC_001806.1 + 151097 0.67 0.481878
Target:  5'- -nCGCGGGGGuCGCGggggUCgCgGGGGGCUc -3'
miRNA:   3'- uuGUGUCCCCuGCGU----GG-GgCCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.