miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 9164 0.68 0.412819
Target:  5'- -nCAUcGGGGAgacaacggccgUGUAgCCCGGGGGUCg -3'
miRNA:   3'- uuGUGuCCCCU-----------GCGUgGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 9775 0.67 0.455291
Target:  5'- gGGCGCGuGGGGAgGgGCCCCgacgugcgggugGGuGGGCUc -3'
miRNA:   3'- -UUGUGU-CCCCUgCgUGGGG------------CC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 9938 0.66 0.49454
Target:  5'- aGAUACAggccggaguguuguGGGGACGCGUCCCGgaacuccaauugacGGaGGCCg -3'
miRNA:   3'- -UUGUGU--------------CCCCUGCGUGGGGC--------------CC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 10351 0.7 0.314652
Target:  5'- cGCACAugugagacuucGGGGGCGCugggccaagACCUCGGGGGg- -3'
miRNA:   3'- uUGUGU-----------CCCCUGCG---------UGGGGCCCCCgg -5'
5981 3' -64.5 NC_001806.1 + 11335 0.72 0.229297
Target:  5'- -cCACGGGGGGCGUcggaagcccagccGCCCCaGcGGGCUc -3'
miRNA:   3'- uuGUGUCCCCUGCG-------------UGGGGcC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 12967 0.67 0.446606
Target:  5'- uGGCGuuGGGGucuCGgacaGCUCCGGGGGCa -3'
miRNA:   3'- -UUGUguCCCCu--GCg---UGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 14353 0.72 0.21942
Target:  5'- uACGaGGGGGACGgcaaaGCCCCccaGGGGGCUg -3'
miRNA:   3'- uUGUgUCCCCUGCg----UGGGG---CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 16616 0.7 0.301212
Target:  5'- cACACGGGGGAgggaugugguCGUugGCCCCGauaaGGGGaCCg -3'
miRNA:   3'- uUGUGUCCCCU----------GCG--UGGGGC----CCCC-GG- -5'
5981 3' -64.5 NC_001806.1 + 21484 0.7 0.300552
Target:  5'- cGACGCAGccGACGCcgccggcgaccggGCCCCGgcccGGGGCCg -3'
miRNA:   3'- -UUGUGUCccCUGCG-------------UGGGGC----CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 21798 0.68 0.412819
Target:  5'- cGGCAgccccCGGGcGGACGCcgcCCCCGcccGGGCCa -3'
miRNA:   3'- -UUGU-----GUCC-CCUGCGu--GGGGCc--CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 22665 0.66 0.500013
Target:  5'- cGGCGCcgcGGGGAuccuCGcCGCCCUGGGGcggcuguccGCCg -3'
miRNA:   3'- -UUGUGu--CCCCU----GC-GUGGGGCCCC---------CGG- -5'
5981 3' -64.5 NC_001806.1 + 22721 0.67 0.464067
Target:  5'- -cCGCGGGGGGCGacgACCCCGac-GCCg -3'
miRNA:   3'- uuGUGUCCCCUGCg--UGGGGCcccCGG- -5'
5981 3' -64.5 NC_001806.1 + 23479 0.66 0.518444
Target:  5'- cGGCGCAGGcccgccCGCGCCCCGu-GGCCg -3'
miRNA:   3'- -UUGUGUCCccu---GCGUGGGGCccCCGG- -5'
5981 3' -64.5 NC_001806.1 + 24666 0.67 0.455291
Target:  5'- uGGCGCuGGGGcgcgaggcgguGCGCGCcggCCCGGcccgguggcgcGGGCCg -3'
miRNA:   3'- -UUGUGuCCCC-----------UGCGUG---GGGCC-----------CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 24780 0.71 0.257674
Target:  5'- uGCGCGGcgacGACGaCGgCCCGGGGGCCc -3'
miRNA:   3'- uUGUGUCcc--CUGC-GUgGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 25422 0.66 0.518444
Target:  5'- gGGCGguGGuggugcgcGGGCGC-CCCCGGaGGGUUu -3'
miRNA:   3'- -UUGUguCC--------CCUGCGuGGGGCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 25515 0.67 0.455291
Target:  5'- gAGCGC--GGGACGCGCCggGGaGGGCUg -3'
miRNA:   3'- -UUGUGucCCCUGCGUGGggCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 27242 0.74 0.173265
Target:  5'- -uCACAGGgcGGGC-CGCCUCGGGGGCg -3'
miRNA:   3'- uuGUGUCC--CCUGcGUGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 27770 0.68 0.388539
Target:  5'- gGACACc-GGGuuGgGCCCCcaaaucGGGGGCCg -3'
miRNA:   3'- -UUGUGucCCCugCgUGGGG------CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 27818 0.69 0.350212
Target:  5'- uGAUAUucuuuGGGGGCGCcggguugguCCCCGgggacGGGGCCg -3'
miRNA:   3'- -UUGUGu----CCCCUGCGu--------GGGGC-----CCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.