miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 2183 0.68 0.386163
Target:  5'- cGACACGucGGGGGCGCcgguccaauugcccGCCCaGGcGGCCg -3'
miRNA:   3'- -UUGUGU--CCCCUGCG--------------UGGGgCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2281 0.66 0.527761
Target:  5'- cGCGCucGGcGGAC-CACUCCGGcGGCCc -3'
miRNA:   3'- uUGUGu-CC-CCUGcGUGGGGCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2434 0.75 0.139338
Target:  5'- cGCGCAGGGGGCcaaagaggcgGC-CCCCGGcGGCCc -3'
miRNA:   3'- uUGUGUCCCCUG----------CGuGGGGCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2666 0.71 0.250178
Target:  5'- --gGCGGccgcGGGCGCcgccguguggcuggGCCCCGGGGGCUg -3'
miRNA:   3'- uugUGUCc---CCUGCG--------------UGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2719 0.7 0.32854
Target:  5'- cGCcCAGGGGGuCgGgGCCCuCGGcGGGCCg -3'
miRNA:   3'- uUGuGUCCCCU-G-CgUGGG-GCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2766 0.75 0.14991
Target:  5'- gGGCGCGGGcGGGCcugcgccgcgGCGgCCCGGGGcGCCg -3'
miRNA:   3'- -UUGUGUCC-CCUG----------CGUgGGGCCCC-CGG- -5'
5981 3' -64.5 NC_001806.1 + 2813 0.78 0.093696
Target:  5'- --gGCGGGGGcgggcuCGgGCCCCGGGGGCg -3'
miRNA:   3'- uugUGUCCCCu-----GCgUGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 2855 0.72 0.240649
Target:  5'- gGGCGCggggaGGGGGGCGCGggcguCCgagCCGGGGGCg -3'
miRNA:   3'- -UUGUG-----UCCCCUGCGU-----GG---GGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 2917 0.68 0.396528
Target:  5'- ---uCGGGGGuCGCgggccgccGCCuCCGGGcGGCCg -3'
miRNA:   3'- uuguGUCCCCuGCG--------UGG-GGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 3053 0.66 0.490907
Target:  5'- --aGCAGGGGGCGCagGCUCUGGuuGUCa -3'
miRNA:   3'- uugUGUCCCCUGCG--UGGGGCCccCGG- -5'
5981 3' -64.5 NC_001806.1 + 3346 0.71 0.257091
Target:  5'- -cCGCGGGGGGCuggcggGCcgggccccggccaGCCCCGGGacGGCCg -3'
miRNA:   3'- uuGUGUCCCCUG------CG-------------UGGGGCCC--CCGG- -5'
5981 3' -64.5 NC_001806.1 + 3553 0.67 0.47293
Target:  5'- gGGCGCGGcGGACaGcCGCCCCaGGGcGGCg -3'
miRNA:   3'- -UUGUGUCcCCUG-C-GUGGGG-CCC-CCGg -5'
5981 3' -64.5 NC_001806.1 + 4376 0.68 0.429517
Target:  5'- -cCGCGGGGGuccuCGcCGCCgCCcGGGGCUu -3'
miRNA:   3'- uuGUGUCCCCu---GC-GUGG-GGcCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 4438 0.75 0.157358
Target:  5'- --gGCGGGGGcgGCGUcCgCCCGGGGGCUg -3'
miRNA:   3'- uugUGUCCCC--UGCGuG-GGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 5768 0.7 0.314652
Target:  5'- --gGCAGGGGGCGgGgCCCGGGccCCg -3'
miRNA:   3'- uugUGUCCCCUGCgUgGGGCCCccGG- -5'
5981 3' -64.5 NC_001806.1 + 5938 0.68 0.396528
Target:  5'- --gGCGGgcGGGAC-CGCCCCaaGGGGGCg -3'
miRNA:   3'- uugUGUC--CCCUGcGUGGGG--CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 6043 0.68 0.39412
Target:  5'- gAGCACuGGcGccgugcccgacuccGCGCcgGCCCCGGGGGCg -3'
miRNA:   3'- -UUGUGuCCcC--------------UGCG--UGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 6329 1.08 0.000589
Target:  5'- aAACACAGGGGACGCACCCCGGGGGCCu -3'
miRNA:   3'- -UUGUGUCCCCUGCGUGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 6426 0.69 0.332794
Target:  5'- gGACGCGGGGGugGaggaggggggaCgCGGGGGCg -3'
miRNA:   3'- -UUGUGUCCCCugCgug--------GgGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 9132 0.69 0.365215
Target:  5'- aAACAgggAGGGGGCGUcgacAgCCUGGaGGGCCa -3'
miRNA:   3'- -UUGUg--UCCCCUGCG----UgGGGCC-CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.