miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 6329 1.08 0.000589
Target:  5'- aAACACAGGGGACGCACCCCGGGGGCCu -3'
miRNA:   3'- -UUGUGUCCCCUGCGUGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 115225 0.81 0.052212
Target:  5'- uGCAacccccGGGGACGCGCCgCCGGGGGCg -3'
miRNA:   3'- uUGUgu----CCCCUGCGUGG-GGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 147657 0.8 0.070955
Target:  5'- -cCGCGGGgcGGGCGgccggcucCGCCCCGGGGGCCg -3'
miRNA:   3'- uuGUGUCC--CCUGC--------GUGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 102337 0.78 0.089101
Target:  5'- cGCGuccCGGGGGACGUcCCCCGGGGccGCCg -3'
miRNA:   3'- uUGU---GUCCCCUGCGuGGGGCCCC--CGG- -5'
5981 3' -64.5 NC_001806.1 + 2813 0.78 0.093696
Target:  5'- --gGCGGGGGcgggcuCGgGCCCCGGGGGCg -3'
miRNA:   3'- uugUGUCCCCu-----GCgUGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 95377 0.77 0.108861
Target:  5'- gGGCACGGGGGuugggaGC-UCCCGGGGGCg -3'
miRNA:   3'- -UUGUGUCCCCug----CGuGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 147693 0.77 0.111603
Target:  5'- gGGCGCGGGGG-CGgGCCCCGGaGGCg -3'
miRNA:   3'- -UUGUGUCCCCuGCgUGGGGCCcCCGg -5'
5981 3' -64.5 NC_001806.1 + 29971 0.76 0.129453
Target:  5'- -cCGCGGGGGGCGUcugGCCCCuccggGGGGGUUg -3'
miRNA:   3'- uuGUGUCCCCUGCG---UGGGG-----CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2434 0.75 0.139338
Target:  5'- cGCGCAGGGGGCcaaagaggcgGC-CCCCGGcGGCCc -3'
miRNA:   3'- uUGUGUCCCCUG----------CGuGGGGCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147791 0.75 0.145242
Target:  5'- cGGgGCGGGGGGCggagccuggcauggGCGCCgCgGGGGGCCu -3'
miRNA:   3'- -UUgUGUCCCCUG--------------CGUGG-GgCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 132654 0.75 0.148821
Target:  5'- uGCGCGGGGccgcggccgcuuacGcCGCGCuCCUGGGGGCCu -3'
miRNA:   3'- uUGUGUCCC--------------CuGCGUG-GGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 2766 0.75 0.14991
Target:  5'- gGGCGCGGGcGGGCcugcgccgcgGCGgCCCGGGGcGCCg -3'
miRNA:   3'- -UUGUGUCC-CCUG----------CGUgGGGCCCC-CGG- -5'
5981 3' -64.5 NC_001806.1 + 4438 0.75 0.157358
Target:  5'- --gGCGGGGGcgGCGUcCgCCCGGGGGCUg -3'
miRNA:   3'- uugUGUCCCC--UGCGuG-GGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 151069 0.74 0.161207
Target:  5'- cGCGCGGGGGuCGCGggggUCgCGGGGGUCg -3'
miRNA:   3'- uUGUGUCCCCuGCGU----GGgGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 77948 0.74 0.169158
Target:  5'- aAugGgGGGGuGACGCggcgGCCCCGGGGccGCCg -3'
miRNA:   3'- -UugUgUCCC-CUGCG----UGGGGCCCC--CGG- -5'
5981 3' -64.5 NC_001806.1 + 27242 0.74 0.173265
Target:  5'- -uCACAGGgcGGGC-CGCCUCGGGGGCg -3'
miRNA:   3'- uuGUGUCC--CCUGcGUGGGGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 65448 0.74 0.17746
Target:  5'- --aGCGGGGGAUGCcgcgGCCCCcggguccuGGGGGCg -3'
miRNA:   3'- uugUGUCCCCUGCG----UGGGG--------CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 146776 0.74 0.181745
Target:  5'- cGACGCGGGGGcCGUcggguACUCgGGGGGCa -3'
miRNA:   3'- -UUGUGUCCCCuGCG-----UGGGgCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 128884 0.73 0.190139
Target:  5'- ----uGGGGGGCGCGgagucgggagaucCUCUGGGGGCCg -3'
miRNA:   3'- uugugUCCCCUGCGU-------------GGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147498 0.73 0.19059
Target:  5'- cGGCGCcggAGGGGGCgGCGCCgCGGgaGGGCCc -3'
miRNA:   3'- -UUGUG---UCCCCUG-CGUGGgGCC--CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.