miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 147192 0.73 0.195153
Target:  5'- aAGCGgAGGaGGACGCgGCCCCGGcGGCg -3'
miRNA:   3'- -UUGUgUCC-CCUGCG-UGGGGCCcCCGg -5'
5981 3' -64.5 NC_001806.1 + 95306 0.73 0.199811
Target:  5'- gGGCGCGGcGGACGCGCCCaaGGGcGGCg -3'
miRNA:   3'- -UUGUGUCcCCUGCGUGGGg-CCC-CCGg -5'
5981 3' -64.5 NC_001806.1 + 48466 0.73 0.199811
Target:  5'- gGACAUguuGGGGGACGgGgauuCCCC-GGGGCCg -3'
miRNA:   3'- -UUGUG---UCCCCUGCgU----GGGGcCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 127198 0.73 0.204085
Target:  5'- uGCGCGGGGuuacGCGgGCCCCGGGGagacagcGCCu -3'
miRNA:   3'- uUGUGUCCCc---UGCgUGGGGCCCC-------CGG- -5'
5981 3' -64.5 NC_001806.1 + 143113 0.73 0.209417
Target:  5'- cGCugGGGGcGugGCugCCgGgaGGGGCCg -3'
miRNA:   3'- uUGugUCCC-CugCGugGGgC--CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 34309 0.73 0.214369
Target:  5'- cGGCGgGGGGcGGCGCGCCggaCGGGGcGCUg -3'
miRNA:   3'- -UUGUgUCCC-CUGCGUGGg--GCCCC-CGG- -5'
5981 3' -64.5 NC_001806.1 + 71642 0.72 0.21891
Target:  5'- gGGgGCAuGGGugGCggaaacaacacuaACCCCGGGGGUCc -3'
miRNA:   3'- -UUgUGUcCCCugCG-------------UGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 29613 0.72 0.21942
Target:  5'- uGAgGCGGGGGGCgGCaaggACCCUGGGGGa- -3'
miRNA:   3'- -UUgUGUCCCCUG-CG----UGGGGCCCCCgg -5'
5981 3' -64.5 NC_001806.1 + 14353 0.72 0.21942
Target:  5'- uACGaGGGGGACGgcaaaGCCCCccaGGGGGCUg -3'
miRNA:   3'- uUGUgUCCCCUGCg----UGGGG---CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 148154 0.72 0.224053
Target:  5'- -uCACGGGGGGCGCggcggcGCCUCugcguggGGGGGCg -3'
miRNA:   3'- uuGUGUCCCCUGCG------UGGGG-------CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 31962 0.72 0.224573
Target:  5'- uGGCGgGGcGGGACgggGCGCCCaaaaGGGGGUCg -3'
miRNA:   3'- -UUGUgUC-CCCUG---CGUGGGg---CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 11335 0.72 0.229297
Target:  5'- -cCACGGGGGGCGUcggaagcccagccGCCCCaGcGGGCUc -3'
miRNA:   3'- uuGUGUCCCCUGCG-------------UGGGGcC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 85964 0.72 0.229828
Target:  5'- --uGCGGGgcuuGGACGCGCCUCccgGGGGGUCg -3'
miRNA:   3'- uugUGUCC----CCUGCGUGGGG---CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 67427 0.72 0.235186
Target:  5'- ----uGGGGGucaGCGCCCCaGGGGGCg -3'
miRNA:   3'- uugugUCCCCug-CGUGGGG-CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 2855 0.72 0.240649
Target:  5'- gGGCGCggggaGGGGGGCGCGggcguCCgagCCGGGGGCg -3'
miRNA:   3'- -UUGUG-----UCCCCUGCGU-----GG---GGCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 41825 0.72 0.246217
Target:  5'- uACGCGGGGGcggGCGUcaggGCCCCGGGcGCg -3'
miRNA:   3'- uUGUGUCCCC---UGCG----UGGGGCCCcCGg -5'
5981 3' -64.5 NC_001806.1 + 2666 0.71 0.250178
Target:  5'- --gGCGGccgcGGGCGCcgccguguggcuggGCCCCGGGGGCUg -3'
miRNA:   3'- uugUGUCc---CCUGCG--------------UGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 3346 0.71 0.257091
Target:  5'- -cCGCGGGGGGCuggcggGCcgggccccggccaGCCCCGGGacGGCCg -3'
miRNA:   3'- uuGUGUCCCCUG------CG-------------UGGGGCCC--CCGG- -5'
5981 3' -64.5 NC_001806.1 + 24780 0.71 0.257674
Target:  5'- uGCGCGGcgacGACGaCGgCCCGGGGGCCc -3'
miRNA:   3'- uUGUGUCcc--CUGC-GUgGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 86359 0.71 0.257674
Target:  5'- --gGCAGGGGuCGCGCCagccacuccuCCGcGGGGCg -3'
miRNA:   3'- uugUGUCCCCuGCGUGG----------GGC-CCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.