miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 151524 0.67 0.47204
Target:  5'- --uGCGGuuGGGACgGCGCccgugggCCCGGGcGGCCg -3'
miRNA:   3'- uugUGUC--CCCUG-CGUG-------GGGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 151275 0.69 0.365215
Target:  5'- gGGCGguGGGGGcCGgGgCCgGGGGGCg -3'
miRNA:   3'- -UUGUguCCCCU-GCgUgGGgCCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 151225 0.66 0.527761
Target:  5'- gGGCGCgAGGGGGgGUgggaggggucaGCCCCGccccccGGGCCc -3'
miRNA:   3'- -UUGUG-UCCCCUgCG-----------UGGGGCc-----CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 151097 0.67 0.481878
Target:  5'- -nCGCGGGGGuCGCGggggUCgCgGGGGGCUc -3'
miRNA:   3'- uuGUGUCCCCuGCGU----GG-GgCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 151069 0.74 0.161207
Target:  5'- cGCGCGGGGGuCGCGggggUCgCGGGGGUCg -3'
miRNA:   3'- uUGUGUCCCCuGCGU----GGgGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 151029 0.67 0.455291
Target:  5'- cAC-CAGGuGGCGCACCCggaCGuGGGGCg -3'
miRNA:   3'- uUGuGUCCcCUGCGUGGG---GC-CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 150242 0.69 0.357659
Target:  5'- cGCaACAGGGGcuuggccuGCGUcgguGCCCCGGGGcuucccGCCu -3'
miRNA:   3'- uUG-UGUCCCC--------UGCG----UGGGGCCCC------CGG- -5'
5981 3' -64.5 NC_001806.1 + 150082 0.68 0.429517
Target:  5'- cGCGuccCAGGGGAgGCAggcCCaCCGcGGGGCg -3'
miRNA:   3'- uUGU---GUCCCCUgCGU---GG-GGC-CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 149875 0.68 0.421118
Target:  5'- -uCGCGGacGGAgGguCCCUGGGGGUCg -3'
miRNA:   3'- uuGUGUCc-CCUgCguGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 148775 0.7 0.307876
Target:  5'- --gAgGGGGGGCGC-CCCCGcaacugccGGGGUCu -3'
miRNA:   3'- uugUgUCCCCUGCGuGGGGC--------CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 148154 0.72 0.224053
Target:  5'- -uCACGGGGGGCGCggcggcGCCUCugcguggGGGGGCg -3'
miRNA:   3'- uuGUGUCCCCUGCG------UGGGG-------CCCCCGg -5'
5981 3' -64.5 NC_001806.1 + 148089 0.69 0.335653
Target:  5'- gGGCGCcgaGGGGGGCGCugUCCGagccGcGGCCg -3'
miRNA:   3'- -UUGUG---UCCCCUGCGugGGGCc---C-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 147791 0.75 0.145242
Target:  5'- cGGgGCGGGGGGCggagccuggcauggGCGCCgCgGGGGGCCu -3'
miRNA:   3'- -UUgUGUCCCCUG--------------CGUGG-GgCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147744 0.68 0.388539
Target:  5'- cGCGCGGGGGcGCGCGggUCCCGacgcGGCCg -3'
miRNA:   3'- uUGUGUCCCC-UGCGU--GGGGCcc--CCGG- -5'
5981 3' -64.5 NC_001806.1 + 147693 0.77 0.111603
Target:  5'- gGGCGCGGGGG-CGgGCCCCGGaGGCg -3'
miRNA:   3'- -UUGUGUCCCCuGCgUGGGGCCcCCGg -5'
5981 3' -64.5 NC_001806.1 + 147657 0.8 0.070955
Target:  5'- -cCGCGGGgcGGGCGgccggcucCGCCCCGGGGGCCg -3'
miRNA:   3'- uuGUGUCC--CCUGC--------GUGGGGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147498 0.73 0.19059
Target:  5'- cGGCGCcggAGGGGGCgGCGCCgCGGgaGGGCCc -3'
miRNA:   3'- -UUGUG---UCCCCUG-CGUGGgGCC--CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 147382 0.67 0.47293
Target:  5'- cGGCGCgaggGGGGGACGCGuggaCUGGGGGg- -3'
miRNA:   3'- -UUGUG----UCCCCUGCGUgg--GGCCCCCgg -5'
5981 3' -64.5 NC_001806.1 + 147192 0.73 0.195153
Target:  5'- aAGCGgAGGaGGACGCgGCCCCGGcGGCg -3'
miRNA:   3'- -UUGUgUCC-CCUGCG-UGGGGCCcCCGg -5'
5981 3' -64.5 NC_001806.1 + 146776 0.74 0.181745
Target:  5'- cGACGCGGGGGcCGUcggguACUCgGGGGGCa -3'
miRNA:   3'- -UUGUGUCCCCuGCG-----UGGGgCCCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.