Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5981 | 5' | -51.7 | NC_001806.1 | + | 6363 | 1.06 | 0.009406 |
Target: 5'- aCAGAAACCCACCGGUCCGCCUUUUUUg -3' miRNA: 3'- -GUCUUUGGGUGGCCAGGCGGAAAAAA- -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 68156 | 0.77 | 0.53842 |
Target: 5'- ----cACCCGCCGGUCCGCCc----- -3' miRNA: 3'- gucuuUGGGUGGCCAGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 84099 | 0.73 | 0.73834 |
Target: 5'- gCGGAGGCCCGucgcgccaCGGUCCGCCa----- -3' miRNA: 3'- -GUCUUUGGGUg-------GCCAGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 89895 | 0.72 | 0.806445 |
Target: 5'- gCAGGGACCCcgcguuGCCGG-CCGCCg----- -3' miRNA: 3'- -GUCUUUGGG------UGGCCaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 24800 | 0.7 | 0.873891 |
Target: 5'- cCGGggGCCCugccGCCGGcgCCGCCc----- -3' miRNA: 3'- -GUCuuUGGG----UGGCCa-GGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 23953 | 0.7 | 0.908683 |
Target: 5'- gGGggGgCCGCCGGaguggUCCGCCg----- -3' miRNA: 3'- gUCuuUgGGUGGCC-----AGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 58794 | 0.69 | 0.914888 |
Target: 5'- aCAGGAACgCCGCCgugGGUCCGCg------ -3' miRNA: 3'- -GUCUUUG-GGUGG---CCAGGCGgaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 4060 | 0.69 | 0.920835 |
Target: 5'- uCGGgcGCCCACaCGG-CCGCCg----- -3' miRNA: 3'- -GUCuuUGGGUG-GCCaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 24600 | 0.69 | 0.926523 |
Target: 5'- aGGAGGCCCACuCGcacgCCGCCUg---- -3' miRNA: 3'- gUCUUUGGGUG-GCca--GGCGGAaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 32986 | 0.69 | 0.926523 |
Target: 5'- -cGggGCCCcggGCCGGgCCGCCa----- -3' miRNA: 3'- guCuuUGGG---UGGCCaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 81051 | 0.69 | 0.931952 |
Target: 5'- aCAGcGGACCCGCCGGgcgCUGCUUc---- -3' miRNA: 3'- -GUC-UUUGGGUGGCCa--GGCGGAaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 57091 | 0.69 | 0.931952 |
Target: 5'- aCAGAAcaagggccGCuCCACCGG-CCGCCa----- -3' miRNA: 3'- -GUCUU--------UG-GGUGGCCaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 20152 | 0.69 | 0.937122 |
Target: 5'- gAGAGACCCGCCcc-CCGCCg----- -3' miRNA: 3'- gUCUUUGGGUGGccaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 38057 | 0.69 | 0.937122 |
Target: 5'- -cGAcGCCCACgGcGUCCGCCg----- -3' miRNA: 3'- guCUuUGGGUGgC-CAGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 68587 | 0.68 | 0.942034 |
Target: 5'- gCGGcgGCCCugggGCCGGUCCGCg------ -3' miRNA: 3'- -GUCuuUGGG----UGGCCAGGCGgaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 72936 | 0.68 | 0.951092 |
Target: 5'- ---cGACCCACCuGGacUCCGCCUUc--- -3' miRNA: 3'- gucuUUGGGUGG-CC--AGGCGGAAaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 60468 | 0.68 | 0.95484 |
Target: 5'- aCGGAAACcaggcccccucugCCGCCGG-CCGCCg----- -3' miRNA: 3'- -GUCUUUG-------------GGUGGCCaGGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 4274 | 0.68 | 0.955244 |
Target: 5'- cCAGcucGACCCGCCGGggCUGCCc----- -3' miRNA: 3'- -GUCu--UUGGGUGGCCa-GGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 96514 | 0.68 | 0.955244 |
Target: 5'- aCGGggGCCCugccacuCCGGcgCCGCCc----- -3' miRNA: 3'- -GUCuuUGGGu------GGCCa-GGCGGaaaaaa -5' |
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5981 | 5' | -51.7 | NC_001806.1 | + | 47995 | 0.68 | 0.959151 |
Target: 5'- -cGAGGCCCGCCGG-CUGCg------ -3' miRNA: 3'- guCUUUGGGUGGCCaGGCGgaaaaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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