miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 5' -51.7 NC_001806.1 + 3324 0.67 0.962816
Target:  5'- -cGggGCCCGCgGGUCCcuccgGCCg----- -3'
miRNA:   3'- guCuuUGGGUGgCCAGG-----CGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 4060 0.69 0.920835
Target:  5'- uCGGgcGCCCACaCGG-CCGCCg----- -3'
miRNA:   3'- -GUCuuUGGGUG-GCCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 4274 0.68 0.955244
Target:  5'- cCAGcucGACCCGCCGGggCUGCCc----- -3'
miRNA:   3'- -GUCu--UUGGGUGGCCa-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 6363 1.06 0.009406
Target:  5'- aCAGAAACCCACCGGUCCGCCUUUUUUg -3'
miRNA:   3'- -GUCUUUGGGUGGCCAGGCGGAAAAAA- -5'
5981 5' -51.7 NC_001806.1 + 20152 0.69 0.937122
Target:  5'- gAGAGACCCGCCcc-CCGCCg----- -3'
miRNA:   3'- gUCUUUGGGUGGccaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 21048 0.66 0.984246
Target:  5'- aGGuGACCUACCGugcuacGUCCGCCg----- -3'
miRNA:   3'- gUCuUUGGGUGGC------CAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 21587 0.66 0.977743
Target:  5'- ----cGCCCGCCGGcccagCCGCCg----- -3'
miRNA:   3'- gucuuUGGGUGGCCa----GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 22924 0.67 0.975188
Target:  5'- gAGGGACCCGCgGGccCCGCUUc---- -3'
miRNA:   3'- gUCUUUGGGUGgCCa-GGCGGAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 23795 0.67 0.966246
Target:  5'- -cGggG-CCGCCGGgggCCGCCUcUUUg -3'
miRNA:   3'- guCuuUgGGUGGCCa--GGCGGAaAAAa -5'
5981 5' -51.7 NC_001806.1 + 23953 0.7 0.908683
Target:  5'- gGGggGgCCGCCGGaguggUCCGCCg----- -3'
miRNA:   3'- gUCuuUgGGUGGCC-----AGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 24600 0.69 0.926523
Target:  5'- aGGAGGCCCACuCGcacgCCGCCUg---- -3'
miRNA:   3'- gUCUUUGGGUG-GCca--GGCGGAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 24800 0.7 0.873891
Target:  5'- cCGGggGCCCugccGCCGGcgCCGCCc----- -3'
miRNA:   3'- -GUCuuUGGG----UGGCCa-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 26651 0.67 0.966246
Target:  5'- cCAGAGgcccgGCCCACCGccgCCGCCc----- -3'
miRNA:   3'- -GUCUU-----UGGGUGGCca-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 28137 0.66 0.980098
Target:  5'- cCGGAGcgaguACCCGCCGGccugagggCCGCCc----- -3'
miRNA:   3'- -GUCUU-----UGGGUGGCCa-------GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 32986 0.69 0.926523
Target:  5'- -cGggGCCCcggGCCGGgCCGCCa----- -3'
miRNA:   3'- guCuuUGGG---UGGCCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 38057 0.69 0.937122
Target:  5'- -cGAcGCCCACgGcGUCCGCCg----- -3'
miRNA:   3'- guCUuUGGGUGgC-CAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 46846 0.68 0.959151
Target:  5'- aCAGccGCCC-UCGGUUCGCCUUc--- -3'
miRNA:   3'- -GUCuuUGGGuGGCCAGGCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 47995 0.68 0.959151
Target:  5'- -cGAGGCCCGCCGG-CUGCg------ -3'
miRNA:   3'- guCUUUGGGUGGCCaGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 51040 0.67 0.966246
Target:  5'- --uGGGCCCGCgGGUCCGCgUg---- -3'
miRNA:   3'- gucUUUGGGUGgCCAGGCGgAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 57091 0.69 0.931952
Target:  5'- aCAGAAcaagggccGCuCCACCGG-CCGCCa----- -3'
miRNA:   3'- -GUCUU--------UG-GGUGGCCaGGCGGaaaaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.