miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 5' -51.7 NC_001806.1 + 147910 0.66 0.982263
Target:  5'- aGGggGCCCGuCCGGccccucggCCGCCc----- -3'
miRNA:   3'- gUCuuUGGGU-GGCCa-------GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 133000 0.66 0.986056
Target:  5'- uCAG-AGCCCuggGCCGGggCCGUCUUg--- -3'
miRNA:   3'- -GUCuUUGGG---UGGCCa-GGCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 123017 0.66 0.985882
Target:  5'- -uGAGGCCCGCCGacgccucGUCCGCg------ -3'
miRNA:   3'- guCUUUGGGUGGC-------CAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 107391 0.66 0.986056
Target:  5'- gGGAAcgcGCCCGCCGGa--GCCUUc--- -3'
miRNA:   3'- gUCUU---UGGGUGGCCaggCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 96514 0.68 0.955244
Target:  5'- aCGGggGCCCugccacuCCGGcgCCGCCc----- -3'
miRNA:   3'- -GUCuuUGGGu------GGCCa-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 89895 0.72 0.806445
Target:  5'- gCAGGGACCCcgcguuGCCGG-CCGCCg----- -3'
miRNA:   3'- -GUCUUUGGG------UGGCCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 88362 0.66 0.984246
Target:  5'- -cGAAGgCCAUCGGggCCGCCg----- -3'
miRNA:   3'- guCUUUgGGUGGCCa-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 85737 0.66 0.977743
Target:  5'- --cGAACCCugCGGUCCggaGCCg----- -3'
miRNA:   3'- gucUUUGGGugGCCAGG---CGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 84099 0.73 0.73834
Target:  5'- gCGGAGGCCCGucgcgccaCGGUCCGCCa----- -3'
miRNA:   3'- -GUCUUUGGGUg-------GCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 83387 0.67 0.972425
Target:  5'- uGGAccGGCCCuguCUGGUCUGCCg----- -3'
miRNA:   3'- gUCU--UUGGGu--GGCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 81051 0.69 0.931952
Target:  5'- aCAGcGGACCCGCCGGgcgCUGCUUc---- -3'
miRNA:   3'- -GUC-UUUGGGUGGCCa--GGCGGAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 73244 0.66 0.984056
Target:  5'- -cGAGGCCCACCcaaacguGG-CCGCCa----- -3'
miRNA:   3'- guCUUUGGGUGG-------CCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 72936 0.68 0.951092
Target:  5'- ---cGACCCACCuGGacUCCGCCUUc--- -3'
miRNA:   3'- gucuUUGGGUGG-CC--AGGCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 72645 0.66 0.980098
Target:  5'- cCGGggGaCgGCCGGUCCGUCg----- -3'
miRNA:   3'- -GUCuuUgGgUGGCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 71270 0.66 0.982263
Target:  5'- cCAGGGACCUGgaGGUCCGCg------ -3'
miRNA:   3'- -GUCUUUGGGUggCCAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 68587 0.68 0.942034
Target:  5'- gCGGcgGCCCugggGCCGGUCCGCg------ -3'
miRNA:   3'- -GUCuuUGGG----UGGCCAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 68156 0.77 0.53842
Target:  5'- ----cACCCGCCGGUCCGCCc----- -3'
miRNA:   3'- gucuuUGGGUGGCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 60468 0.68 0.95484
Target:  5'- aCGGAAACcaggcccccucugCCGCCGG-CCGCCg----- -3'
miRNA:   3'- -GUCUUUG-------------GGUGGCCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 58794 0.69 0.914888
Target:  5'- aCAGGAACgCCGCCgugGGUCCGCg------ -3'
miRNA:   3'- -GUCUUUG-GGUGG---CCAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 57091 0.69 0.931952
Target:  5'- aCAGAAcaagggccGCuCCACCGG-CCGCCa----- -3'
miRNA:   3'- -GUCUU--------UG-GGUGGCCaGGCGGaaaaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.