miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5982 5' -51.3 NC_001806.1 + 19418 0.8 0.454597
Target:  5'- gAAUCCGAuGCuGUcUCGGAUUCGACCu -3'
miRNA:   3'- -UUAGGCUcUGuCGuAGCCUAAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 105125 0.78 0.564508
Target:  5'- gGAUUgGGGACAGCuuUCGGGggCGGCCg -3'
miRNA:   3'- -UUAGgCUCUGUCGu-AGCCUaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 4823 0.75 0.721556
Target:  5'- gGGUCCGGGGCGGCGaggccgCGGggUCGGgCg -3'
miRNA:   3'- -UUAGGCUCUGUCGUa-----GCCuaAGCUgG- -5'
5982 5' -51.3 NC_001806.1 + 68239 0.73 0.799819
Target:  5'- --gCCGAGACGGCAaacggggCGGA--CGACCc -3'
miRNA:   3'- uuaGGCUCUGUCGUa------GCCUaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 65156 0.73 0.817967
Target:  5'- cAUCCGAGuCGGaAUCGGA--CGACCg -3'
miRNA:   3'- uUAGGCUCuGUCgUAGCCUaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 137865 0.72 0.852039
Target:  5'- --gCCGAcgcaGACGGCGUCccuGGAgUCGACCu -3'
miRNA:   3'- uuaGGCU----CUGUCGUAG---CCUaAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 19450 0.71 0.882728
Target:  5'- -cUCCaAGGCuGUAUCGGAUUCuACCu -3'
miRNA:   3'- uuAGGcUCUGuCGUAGCCUAAGcUGG- -5'
5982 5' -51.3 NC_001806.1 + 31302 0.71 0.896676
Target:  5'- uGGUCCGGGG-AGCAggGGGcgUCGACCc -3'
miRNA:   3'- -UUAGGCUCUgUCGUagCCUa-AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 27037 0.69 0.937647
Target:  5'- --gCCGAGGCGGuCAUCGGGc-CGugCc -3'
miRNA:   3'- uuaGGCUCUGUC-GUAGCCUaaGCugG- -5'
5982 5' -51.3 NC_001806.1 + 86414 0.69 0.948404
Target:  5'- -cUCCgGAGACGGUAUCGucguaaaacagcaggUCGACCa -3'
miRNA:   3'- uuAGG-CUCUGUCGUAGCcua------------AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 86065 0.69 0.958614
Target:  5'- --cCUGGGGCGGCGgcgucuagcucgCGGAgggCGGCCa -3'
miRNA:   3'- uuaGGCUCUGUCGUa-----------GCCUaa-GCUGG- -5'
5982 5' -51.3 NC_001806.1 + 21624 0.69 0.959366
Target:  5'- --gCCGGuGGCGGcCAUCGGcGUcaUCGACCu -3'
miRNA:   3'- uuaGGCU-CUGUC-GUAGCC-UA--AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 81950 0.69 0.959366
Target:  5'- --cCCGGGACcGC--CGGGUUCGGCg -3'
miRNA:   3'- uuaGGCUCUGuCGuaGCCUAAGCUGg -5'
5982 5' -51.3 NC_001806.1 + 30523 0.68 0.966372
Target:  5'- cGUCCGAGGaagaGGCG-CGGGUcgGGCCa -3'
miRNA:   3'- uUAGGCUCUg---UCGUaGCCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 3086 0.68 0.969535
Target:  5'- aGGUCCGcGGCGGCGgcggccgCGGAgcUCGGCa -3'
miRNA:   3'- -UUAGGCuCUGUCGUa------GCCUa-AGCUGg -5'
5982 5' -51.3 NC_001806.1 + 3504 0.68 0.975213
Target:  5'- cGUCgGcguggcGGGCGGCGUCGGggUCGucGCCc -3'
miRNA:   3'- uUAGgC------UCUGUCGUAGCCuaAGC--UGG- -5'
5982 5' -51.3 NC_001806.1 + 57935 0.67 0.977743
Target:  5'- --gUCGAcGACGGCAUCGGAca-GGCa -3'
miRNA:   3'- uuaGGCU-CUGUCGUAGCCUaagCUGg -5'
5982 5' -51.3 NC_001806.1 + 49661 0.67 0.977743
Target:  5'- -cUCCG-GGCGGCAuucccgUUGGAU-CGACUg -3'
miRNA:   3'- uuAGGCuCUGUCGU------AGCCUAaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 55454 0.67 0.977743
Target:  5'- -uUCCGAaacCGGCAUCGGAUcUGcACCc -3'
miRNA:   3'- uuAGGCUcu-GUCGUAGCCUAaGC-UGG- -5'
5982 5' -51.3 NC_001806.1 + 38510 0.67 0.977743
Target:  5'- --gUCGGGGCuggGGUGUCGGAUaUGGCCu -3'
miRNA:   3'- uuaGGCUCUG---UCGUAGCCUAaGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.