miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5982 5' -51.3 NC_001806.1 + 3086 0.68 0.969535
Target:  5'- aGGUCCGcGGCGGCGgcggccgCGGAgcUCGGCa -3'
miRNA:   3'- -UUAGGCuCUGUCGUa------GCCUa-AGCUGg -5'
5982 5' -51.3 NC_001806.1 + 3504 0.68 0.975213
Target:  5'- cGUCgGcguggcGGGCGGCGUCGGggUCGucGCCc -3'
miRNA:   3'- uUAGgC------UCUGUCGUAGCCuaAGC--UGG- -5'
5982 5' -51.3 NC_001806.1 + 4823 0.75 0.721556
Target:  5'- gGGUCCGGGGCGGCGaggccgCGGggUCGGgCg -3'
miRNA:   3'- -UUAGGCUCUGUCGUa-----GCCuaAGCUgG- -5'
5982 5' -51.3 NC_001806.1 + 6221 0.67 0.984192
Target:  5'- cGUCgGAgcgGACGGCGUCGGcAUcgCGACg -3'
miRNA:   3'- uUAGgCU---CUGUCGUAGCC-UAa-GCUGg -5'
5982 5' -51.3 NC_001806.1 + 9576 0.66 0.98897
Target:  5'- uGUCCGAGcuccaguccgcguACAGC-UCGcugUCGGCCa -3'
miRNA:   3'- uUAGGCUC-------------UGUCGuAGCcuaAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 19418 0.8 0.454597
Target:  5'- gAAUCCGAuGCuGUcUCGGAUUCGACCu -3'
miRNA:   3'- -UUAGGCUcUGuCGuAGCCUAAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 19450 0.71 0.882728
Target:  5'- -cUCCaAGGCuGUAUCGGAUUCuACCu -3'
miRNA:   3'- uuAGGcUCUGuCGUAGCCUAAGcUGG- -5'
5982 5' -51.3 NC_001806.1 + 21624 0.69 0.959366
Target:  5'- --gCCGGuGGCGGcCAUCGGcGUcaUCGACCu -3'
miRNA:   3'- uuaGGCU-CUGUC-GUAGCC-UA--AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 27037 0.69 0.937647
Target:  5'- --gCCGAGGCGGuCAUCGGGc-CGugCc -3'
miRNA:   3'- uuaGGCUCUGUC-GUAGCCUaaGCugG- -5'
5982 5' -51.3 NC_001806.1 + 30523 0.68 0.966372
Target:  5'- cGUCCGAGGaagaGGCG-CGGGUcgGGCCa -3'
miRNA:   3'- uUAGGCUCUg---UCGUaGCCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 31302 0.71 0.896676
Target:  5'- uGGUCCGGGG-AGCAggGGGcgUCGACCc -3'
miRNA:   3'- -UUAGGCUCUgUCGUagCCUa-AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 35499 0.66 0.989112
Target:  5'- -cUCCGgagaGGGCgaGGCGUCGGAgcggGGCCg -3'
miRNA:   3'- uuAGGC----UCUG--UCGUAGCCUaag-CUGG- -5'
5982 5' -51.3 NC_001806.1 + 38510 0.67 0.977743
Target:  5'- --gUCGGGGCuggGGUGUCGGAUaUGGCCu -3'
miRNA:   3'- uuaGGCUCUG---UCGUAGCCUAaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 39729 0.67 0.982224
Target:  5'- uGAUCCGAcGAUucauGGCGUCaGGUggGACCu -3'
miRNA:   3'- -UUAGGCU-CUG----UCGUAGcCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 49661 0.67 0.977743
Target:  5'- -cUCCG-GGCGGCAuucccgUUGGAU-CGACUg -3'
miRNA:   3'- uuAGGCuCUGUCGU------AGCCUAaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 52589 0.66 0.98747
Target:  5'- --cCCGGGGgGGCAUCgcgcgggGGGUggGACCu -3'
miRNA:   3'- uuaGGCUCUgUCGUAG-------CCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 55454 0.67 0.977743
Target:  5'- -uUCCGAaacCGGCAUCGGAUcUGcACCc -3'
miRNA:   3'- uuAGGCUcu-GUCGUAGCCUAaGC-UGG- -5'
5982 5' -51.3 NC_001806.1 + 57935 0.67 0.977743
Target:  5'- --gUCGAcGACGGCAUCGGAca-GGCa -3'
miRNA:   3'- uuaGGCU-CUGUCGUAGCCUaagCUGg -5'
5982 5' -51.3 NC_001806.1 + 65156 0.73 0.817967
Target:  5'- cAUCCGAGuCGGaAUCGGA--CGACCg -3'
miRNA:   3'- uUAGGCUCuGUCgUAGCCUaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 65183 0.67 0.98599
Target:  5'- cGUCCGAGACGaacuCcgCGGGgcCGACUg -3'
miRNA:   3'- uUAGGCUCUGUc---GuaGCCUaaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.