Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 144616 | 0.67 | 0.98599 |
Target: 5'- --gCCGGGGCGGCcaaGGGgcgUCGGCg -3' miRNA: 3'- uuaGGCUCUGUCGuagCCUa--AGCUGg -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 137865 | 0.72 | 0.852039 |
Target: 5'- --gCCGAcgcaGACGGCGUCccuGGAgUCGACCu -3' miRNA: 3'- uuaGGCU----CUGUCGUAG---CCUaAGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 120333 | 0.67 | 0.977743 |
Target: 5'- cGGUCgGGGGCGGCGggucgucccgcUCGGcgaCGACCu -3' miRNA: 3'- -UUAGgCUCUGUCGU-----------AGCCuaaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 105125 | 0.78 | 0.564508 |
Target: 5'- gGAUUgGGGACAGCuuUCGGGggCGGCCg -3' miRNA: 3'- -UUAGgCUCUGUCGu-AGCCUaaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 95068 | 0.67 | 0.980077 |
Target: 5'- uGUUCG-GGCGGCGggCGGAgcauUUCGAUCg -3' miRNA: 3'- uUAGGCuCUGUCGUa-GCCU----AAGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 86414 | 0.69 | 0.948404 |
Target: 5'- -cUCCgGAGACGGUAUCGucguaaaacagcaggUCGACCa -3' miRNA: 3'- uuAGG-CUCUGUCGUAGCcua------------AGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 86065 | 0.69 | 0.958614 |
Target: 5'- --cCUGGGGCGGCGgcgucuagcucgCGGAgggCGGCCa -3' miRNA: 3'- uuaGGCUCUGUCGUa-----------GCCUaa-GCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 83967 | 0.66 | 0.992749 |
Target: 5'- gAAUUCGAGACGGuCGcCGGGgaccgCGAgCCg -3' miRNA: 3'- -UUAGGCUCUGUC-GUaGCCUaa---GCU-GG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 81950 | 0.69 | 0.959366 |
Target: 5'- --cCCGGGACcGC--CGGGUUCGGCg -3' miRNA: 3'- uuaGGCUCUGuCGuaGCCUAAGCUGg -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 76925 | 0.67 | 0.984192 |
Target: 5'- --gCCGAGGCggagugggacgaGGUAUgGGGUcgcuUCGGCCg -3' miRNA: 3'- uuaGGCUCUG------------UCGUAgCCUA----AGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 68239 | 0.73 | 0.799819 |
Target: 5'- --gCCGAGACGGCAaacggggCGGA--CGACCc -3' miRNA: 3'- uuaGGCUCUGUCGUa------GCCUaaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 65183 | 0.67 | 0.98599 |
Target: 5'- cGUCCGAGACGaacuCcgCGGGgcCGACUg -3' miRNA: 3'- uUAGGCUCUGUc---GuaGCCUaaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 65156 | 0.73 | 0.817967 |
Target: 5'- cAUCCGAGuCGGaAUCGGA--CGACCg -3' miRNA: 3'- uUAGGCUCuGUCgUAGCCUaaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 57935 | 0.67 | 0.977743 |
Target: 5'- --gUCGAcGACGGCAUCGGAca-GGCa -3' miRNA: 3'- uuaGGCU-CUGUCGUAGCCUaagCUGg -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 55454 | 0.67 | 0.977743 |
Target: 5'- -uUCCGAaacCGGCAUCGGAUcUGcACCc -3' miRNA: 3'- uuAGGCUcu-GUCGUAGCCUAaGC-UGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 52589 | 0.66 | 0.98747 |
Target: 5'- --cCCGGGGgGGCAUCgcgcgggGGGUggGACCu -3' miRNA: 3'- uuaGGCUCUgUCGUAG-------CCUAagCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 49661 | 0.67 | 0.977743 |
Target: 5'- -cUCCG-GGCGGCAuucccgUUGGAU-CGACUg -3' miRNA: 3'- uuAGGCuCUGUCGU------AGCCUAaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 39729 | 0.67 | 0.982224 |
Target: 5'- uGAUCCGAcGAUucauGGCGUCaGGUggGACCu -3' miRNA: 3'- -UUAGGCU-CUG----UCGUAGcCUAagCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 38510 | 0.67 | 0.977743 |
Target: 5'- --gUCGGGGCuggGGUGUCGGAUaUGGCCu -3' miRNA: 3'- uuaGGCUCUG---UCGUAGCCUAaGCUGG- -5' |
|||||||
5982 | 5' | -51.3 | NC_001806.1 | + | 35499 | 0.66 | 0.989112 |
Target: 5'- -cUCCGgagaGGGCgaGGCGUCGGAgcggGGCCg -3' miRNA: 3'- uuAGGC----UCUG--UCGUAGCCUaag-CUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home