miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 3' -46.3 NC_001806.1 + 96417 0.76 0.914311
Target:  5'- uGGGC-GCUCUuGGGGUUgacgcUGGGGGUCCu -3'
miRNA:   3'- -CCCGaCGAGAuUUUUAA-----AUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 69699 0.75 0.937306
Target:  5'- cGGGC-GCUCguggGGGAGUUUGAGacGGCCg -3'
miRNA:   3'- -CCCGaCGAGa---UUUUUAAAUUC--CCGGg -5'
5984 3' -46.3 NC_001806.1 + 92927 0.75 0.942365
Target:  5'- gGGGCggGC-CUGGAGGcc--GGGGCCCg -3'
miRNA:   3'- -CCCGa-CGaGAUUUUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 147892 0.75 0.947151
Target:  5'- gGGGCgGgUCUGuuGAcaaGGGGGCCCg -3'
miRNA:   3'- -CCCGaCgAGAUuuUUaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 121496 0.74 0.955503
Target:  5'- gGGGUcGCUCUGuccaccgGGAAgc--AGGGCCCg -3'
miRNA:   3'- -CCCGaCGAGAU-------UUUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 82406 0.74 0.955916
Target:  5'- aGGGgaGg-CUGGAGGgagagUAGGGGCCCg -3'
miRNA:   3'- -CCCgaCgaGAUUUUUaa---AUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 38187 0.74 0.963637
Target:  5'- gGGGC-GCUggUUGAGGAUcguuGGGGCCCu -3'
miRNA:   3'- -CCCGaCGA--GAUUUUUAaau-UCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 70084 0.74 0.963997
Target:  5'- uGGGCUGggCUAucuccccacggUUGAGGGCCa -3'
miRNA:   3'- -CCCGACgaGAUuuuua------AAUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 150867 0.72 0.985717
Target:  5'- cGGGCcgGCUCcgcgggcc--AGGGCCCg -3'
miRNA:   3'- -CCCGa-CGAGauuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 79269 0.72 0.986603
Target:  5'- gGGGCggaggGCUCguu-------GGGGCCCg -3'
miRNA:   3'- -CCCGa----CGAGauuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 76073 0.72 0.986946
Target:  5'- gGGGCUGCU----GGAgc---GGGCCCa -3'
miRNA:   3'- -CCCGACGAgauuUUUaaauuCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 149443 0.71 0.993519
Target:  5'- cGGGCccUGCgUCUGAGucaa-AGGGGCCa -3'
miRNA:   3'- -CCCG--ACG-AGAUUUuuaaaUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 115375 0.71 0.994439
Target:  5'- gGGGacCUGCUCUAuaac----GGGGCCUa -3'
miRNA:   3'- -CCC--GACGAGAUuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 149399 0.7 0.995963
Target:  5'- gGGGCgUGuCUCUGuguauGAGUcaGGGGGUCCc -3'
miRNA:   3'- -CCCG-AC-GAGAUu----UUUAaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 4406 0.7 0.996585
Target:  5'- uGGGCgcgGcCUCgGAGAGgggGGGuGGCCCg -3'
miRNA:   3'- -CCCGa--C-GAGaUUUUUaaaUUC-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 69593 0.7 0.996585
Target:  5'- cGGGCgGCUCUGcGAGgcgGucGGCCUg -3'
miRNA:   3'- -CCCGaCGAGAUuUUUaaaUucCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 4289 0.7 0.996643
Target:  5'- gGGGCUGCcCggccgug--AAGcGGCCCg -3'
miRNA:   3'- -CCCGACGaGauuuuuaaaUUC-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 86978 0.7 0.997127
Target:  5'- gGGGCUGCUCUGGGGAauccgcGAGcGGaUCUg -3'
miRNA:   3'- -CCCGACGAGAUUUUUaaa---UUC-CC-GGG- -5'
5984 3' -46.3 NC_001806.1 + 76556 0.7 0.997322
Target:  5'- gGGGCUGCg--GGAGGUgcUGGccgcgcgcgagcgccGGGCCCa -3'
miRNA:   3'- -CCCGACGagaUUUUUAa-AUU---------------CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 50554 0.7 0.997369
Target:  5'- cGGCUGCUCgccaacagc--GGGCUCa -3'
miRNA:   3'- cCCGACGAGauuuuuaaauuCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.