miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 3' -46.3 NC_001806.1 + 42 0.68 0.999091
Target:  5'- gGGGUgUGUUUUGGG-----GGGGGCCCg -3'
miRNA:   3'- -CCCG-ACGAGAUUUuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 2701 0.67 0.999867
Target:  5'- gGGGCUGC-CgccgccagccgcccaGGGGGUc--GGGGCCCu -3'
miRNA:   3'- -CCCGACGaGa--------------UUUUUAaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 3310 0.67 0.999822
Target:  5'- cGGCgGCg--GGGAAgc--GGGGCCCg -3'
miRNA:   3'- cCCGaCGagaUUUUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 4289 0.7 0.996643
Target:  5'- gGGGCUGCcCggccgug--AAGcGGCCCg -3'
miRNA:   3'- -CCCGACGaGauuuuuaaaUUC-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 4406 0.7 0.996585
Target:  5'- uGGGCgcgGcCUCgGAGAGgggGGGuGGCCCg -3'
miRNA:   3'- -CCCGa--C-GAGaUUUUUaaaUUC-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 5092 0.67 0.999771
Target:  5'- uGGGCgGCggcccgucggu-GGGGCCCg -3'
miRNA:   3'- -CCCGaCGagauuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 11441 0.68 0.999627
Target:  5'- gGGGgUGCUCggaugcGAUUUGAGcucGGCuCCg -3'
miRNA:   3'- -CCCgACGAGauuu--UUAAAUUC---CCG-GG- -5'
5984 3' -46.3 NC_001806.1 + 12993 0.67 0.999856
Target:  5'- gGGGCagcagggUGCUCguguauggggccuuGGGCCCg -3'
miRNA:   3'- -CCCG-------ACGAGauuuuuaaauu---CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 16841 0.66 0.999921
Target:  5'- uGGGUggUGUgguguggGAAGGUUUGGGGGUCUc -3'
miRNA:   3'- -CCCG--ACGaga----UUUUUAAAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 17187 0.67 0.999707
Target:  5'- aGGCgGgUCUGugGAccguAGGGCCCu -3'
miRNA:   3'- cCCGaCgAGAUuuUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 19096 0.68 0.999571
Target:  5'- uGGGCUugggGC-Cgacgggg-UGGGGGCCCg -3'
miRNA:   3'- -CCCGA----CGaGauuuuuaaAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 19191 0.67 0.999771
Target:  5'- cGGGagaGCUCgUGAgccgcAGGUUUAcccGGGCCCg -3'
miRNA:   3'- -CCCga-CGAG-AUU-----UUUAAAUu--CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 23986 0.66 0.999912
Target:  5'- cGGGCUGUcCUGccugcu--GGcGGCCCu -3'
miRNA:   3'- -CCCGACGaGAUuuuuaaauUC-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 25631 0.69 0.997997
Target:  5'- aGGGCUGgggCUGGGGAgggcuGGGGCUg -3'
miRNA:   3'- -CCCGACga-GAUUUUUaaau-UCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 27801 0.68 0.999265
Target:  5'- cGGGCcgUGCaugCUAAuGAUauucuUUGGGGGCgCCg -3'
miRNA:   3'- -CCCG--ACGa--GAUUuUUA-----AAUUCCCG-GG- -5'
5984 3' -46.3 NC_001806.1 + 29103 0.68 0.999265
Target:  5'- gGGGCUGCU-----------GGGGCCg -3'
miRNA:   3'- -CCCGACGAgauuuuuaaauUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 30420 0.67 0.999863
Target:  5'- gGGGCcggGCgugGAGGGUgggcacGGGCCCu -3'
miRNA:   3'- -CCCGa--CGagaUUUUUAaauu--CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 31743 0.67 0.999822
Target:  5'- uGGGCagGCUCUGGug--UUAAccacagagccGcGGCCCg -3'
miRNA:   3'- -CCCGa-CGAGAUUuuuaAAUU----------C-CCGGG- -5'
5984 3' -46.3 NC_001806.1 + 33357 0.67 0.999813
Target:  5'- cGGCUGCag---------GGGGGCCCg -3'
miRNA:   3'- cCCGACGagauuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 34019 0.66 0.999962
Target:  5'- gGGGgUGCUCgucgaucgaccGGGCUCa -3'
miRNA:   3'- -CCCgACGAGauuuuuaaauuCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.