miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 3' -46.3 NC_001806.1 + 151752 0.68 0.999091
Target:  5'- gGGGUgUGUUUUGGG-----GGGGGCCCg -3'
miRNA:   3'- -CCCG-ACGAGAUUUuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 151705 0.66 0.999927
Target:  5'- cGGGCUGCcCgccgccaccgcuUUaAAGGGCCg -3'
miRNA:   3'- -CCCGACGaGauuuuu------AAaUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 150867 0.72 0.985717
Target:  5'- cGGGCcgGCUCcgcgggcc--AGGGCCCg -3'
miRNA:   3'- -CCCGa-CGAGauuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 150169 0.69 0.997595
Target:  5'- cGGCccgGCcCcc--GAUUUGGGGGCCCa -3'
miRNA:   3'- cCCGa--CGaGauuuUUAAAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 149853 0.66 0.999965
Target:  5'- gGGGUcguaUGCggCUGGAGGgucgcggacgGAGGGUCCc -3'
miRNA:   3'- -CCCG----ACGa-GAUUUUUaaa-------UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 149443 0.71 0.993519
Target:  5'- cGGGCccUGCgUCUGAGucaa-AGGGGCCa -3'
miRNA:   3'- -CCCG--ACG-AGAUUUuuaaaUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 149399 0.7 0.995963
Target:  5'- gGGGCgUGuCUCUGuguauGAGUcaGGGGGUCCc -3'
miRNA:   3'- -CCCG-AC-GAGAUu----UUUAaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 147892 0.75 0.947151
Target:  5'- gGGGCgGgUCUGuuGAcaaGGGGGCCCg -3'
miRNA:   3'- -CCCGaCgAGAUuuUUaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 147509 0.69 0.997722
Target:  5'- gGGGCgGCgccgcgg----GAGGGCCCg -3'
miRNA:   3'- -CCCGaCGagauuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 135251 0.68 0.999265
Target:  5'- uGGGCgcGC-CUAcccg---GGGGGCCCg -3'
miRNA:   3'- -CCCGa-CGaGAUuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 127755 0.66 0.999921
Target:  5'- cGGGCUGC-Cg---GGUgc--GGGCCUg -3'
miRNA:   3'- -CCCGACGaGauuuUUAaauuCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 121496 0.74 0.955503
Target:  5'- gGGGUcGCUCUGuccaccgGGAAgc--AGGGCCCg -3'
miRNA:   3'- -CCCGaCGAGAU-------UUUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 115375 0.71 0.994439
Target:  5'- gGGGacCUGCUCUAuaac----GGGGCCUa -3'
miRNA:   3'- -CCC--GACGAGAUuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 114336 0.68 0.99946
Target:  5'- cGGcGCUGCUCUGcucggc---GGcGCCCg -3'
miRNA:   3'- -CC-CGACGAGAUuuuuaaauuCC-CGGG- -5'
5984 3' -46.3 NC_001806.1 + 99513 0.67 0.999771
Target:  5'- -uGCUGCgcugCUGGc-GUUgacAAGGGCCCc -3'
miRNA:   3'- ccCGACGa---GAUUuuUAAa--UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 96417 0.76 0.914311
Target:  5'- uGGGC-GCUCUuGGGGUUgacgcUGGGGGUCCu -3'
miRNA:   3'- -CCCGaCGAGAuUUUUAA-----AUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 92927 0.75 0.942365
Target:  5'- gGGGCggGC-CUGGAGGcc--GGGGCCCg -3'
miRNA:   3'- -CCCGa-CGaGAUUUUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 89215 0.66 0.999971
Target:  5'- gGGGCgagguagggGUUgUAAAAGUUUugccucaaacaaggcGGGGGUCCc -3'
miRNA:   3'- -CCCGa--------CGAgAUUUUUAAA---------------UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 86978 0.7 0.997127
Target:  5'- gGGGCUGCUCUGGGGAauccgcGAGcGGaUCUg -3'
miRNA:   3'- -CCCGACGAGAUUUUUaaa---UUC-CC-GGG- -5'
5984 3' -46.3 NC_001806.1 + 82406 0.74 0.955916
Target:  5'- aGGGgaGg-CUGGAGGgagagUAGGGGCCCg -3'
miRNA:   3'- -CCCgaCgaGAUUUUUaa---AUUCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.