miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 3' -46.3 NC_001806.1 + 35220 0.66 0.999896
Target:  5'- uGGCUgGCUUggaugGGGAGU---AGGGCCUu -3'
miRNA:   3'- cCCGA-CGAGa----UUUUUAaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 37972 0.66 0.999966
Target:  5'- aGGGUUGCgauugguUCUGGGGGcacgccggcGGGGGUCCg -3'
miRNA:   3'- -CCCGACG-------AGAUUUUUaaa------UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 38187 0.74 0.963637
Target:  5'- gGGGC-GCUggUUGAGGAUcguuGGGGCCCu -3'
miRNA:   3'- -CCCGaCGA--GAUUUUUAaau-UCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 38396 0.66 0.999932
Target:  5'- cGGCgGCUCUccgccggcucggGGGGGUCCu -3'
miRNA:   3'- cCCGaCGAGAuuuuuaaa----UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 42005 0.68 0.99941
Target:  5'- aGGGCUGCUCcGugcuggccgcGGGGUU--GGGGUCg -3'
miRNA:   3'- -CCCGACGAGaU----------UUUUAAauUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 46092 0.66 0.999968
Target:  5'- gGGGCgGUUUUGuccggcccGGGGCCUg -3'
miRNA:   3'- -CCCGaCGAGAUuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 49623 0.67 0.999734
Target:  5'- aGGUggagGUUCUGGAGGgacgcgugccGGGCCCg -3'
miRNA:   3'- cCCGa---CGAGAUUUUUaaauu-----CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 50554 0.7 0.997369
Target:  5'- cGGCUGCUCgccaacagc--GGGCUCa -3'
miRNA:   3'- cCCGACGAGauuuuuaaauuCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 55723 0.68 0.999518
Target:  5'- cGGGCUgGCggCUGAcccgggggaccccGAug-UGGGGGCCUc -3'
miRNA:   3'- -CCCGA-CGa-GAUU-------------UUuaaAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 56711 0.68 0.99941
Target:  5'- cGGGUcGCUCUGGGuccuccgGGGGGCg- -3'
miRNA:   3'- -CCCGaCGAGAUUUuuaaa--UUCCCGgg -5'
5984 3' -46.3 NC_001806.1 + 62215 0.68 0.999529
Target:  5'- -cGC-GCUCUGGuccg-UAAGGGCCg -3'
miRNA:   3'- ccCGaCGAGAUUuuuaaAUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 65281 0.69 0.997997
Target:  5'- aGGGUgaaGCgggGAGGAggagGGGGGCCCc -3'
miRNA:   3'- -CCCGa--CGagaUUUUUaaa-UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 69593 0.7 0.996585
Target:  5'- cGGGCgGCUCUGcGAGgcgGucGGCCUg -3'
miRNA:   3'- -CCCGaCGAGAUuUUUaaaUucCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 69699 0.75 0.937306
Target:  5'- cGGGC-GCUCguggGGGAGUUUGAGacGGCCg -3'
miRNA:   3'- -CCCGaCGAGa---UUUUUAAAUUC--CCGGg -5'
5984 3' -46.3 NC_001806.1 + 70084 0.74 0.963997
Target:  5'- uGGGCUGggCUAucuccccacggUUGAGGGCCa -3'
miRNA:   3'- -CCCGACgaGAUuuuua------AAUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 72407 0.66 0.999941
Target:  5'- cGGCcgcgGCUCUGcAucUUUAcGGGGCCa -3'
miRNA:   3'- cCCGa---CGAGAUuUuuAAAU-UCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 76073 0.72 0.986946
Target:  5'- gGGGCUGCU----GGAgc---GGGCCCa -3'
miRNA:   3'- -CCCGACGAgauuUUUaaauuCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 76556 0.7 0.997322
Target:  5'- gGGGCUGCg--GGAGGUgcUGGccgcgcgcgagcgccGGGCCCa -3'
miRNA:   3'- -CCCGACGagaUUUUUAa-AUU---------------CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 79269 0.72 0.986603
Target:  5'- gGGGCggaggGCUCguu-------GGGGCCCg -3'
miRNA:   3'- -CCCGa----CGAGauuuuuaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 81830 0.68 0.999341
Target:  5'- aGGGcCUGUgccacgggcggGAGGGCCCu -3'
miRNA:   3'- -CCC-GACGagauuuuuaaaUUCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.