miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 3' -46.3 NC_001806.1 + 99513 0.67 0.999771
Target:  5'- -uGCUGCgcugCUGGc-GUUgacAAGGGCCCc -3'
miRNA:   3'- ccCGACGa---GAUUuuUAAa--UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 49623 0.67 0.999734
Target:  5'- aGGUggagGUUCUGGAGGgacgcgugccGGGCCCg -3'
miRNA:   3'- cCCGa---CGAGAUUUUUaaauu-----CCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 17187 0.67 0.999707
Target:  5'- aGGCgGgUCUGugGAccguAGGGCCCu -3'
miRNA:   3'- cCCGaCgAGAUuuUUaaauUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 11441 0.68 0.999627
Target:  5'- gGGGgUGCUCggaugcGAUUUGAGcucGGCuCCg -3'
miRNA:   3'- -CCCgACGAGauuu--UUAAAUUC---CCG-GG- -5'
5984 3' -46.3 NC_001806.1 + 19096 0.68 0.999571
Target:  5'- uGGGCUugggGC-Cgacgggg-UGGGGGCCCg -3'
miRNA:   3'- -CCCGA----CGaGauuuuuaaAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 62215 0.68 0.999529
Target:  5'- -cGC-GCUCUGGuccg-UAAGGGCCg -3'
miRNA:   3'- ccCGaCGAGAUUuuuaaAUUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 55723 0.68 0.999518
Target:  5'- cGGGCUgGCggCUGAcccgggggaccccGAug-UGGGGGCCUc -3'
miRNA:   3'- -CCCGA-CGa-GAUU-------------UUuaaAUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 114336 0.68 0.99946
Target:  5'- cGGcGCUGCUCUGcucggc---GGcGCCCg -3'
miRNA:   3'- -CC-CGACGAGAUuuuuaaauuCC-CGGG- -5'
5984 3' -46.3 NC_001806.1 + 56711 0.68 0.99941
Target:  5'- cGGGUcGCUCUGGGuccuccgGGGGGCg- -3'
miRNA:   3'- -CCCGaCGAGAUUUuuaaa--UUCCCGgg -5'
5984 3' -46.3 NC_001806.1 + 42005 0.68 0.99941
Target:  5'- aGGGCUGCUCcGugcuggccgcGGGGUU--GGGGUCg -3'
miRNA:   3'- -CCCGACGAGaU----------UUUUAAauUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 81830 0.68 0.999341
Target:  5'- aGGGcCUGUgccacgggcggGAGGGCCCu -3'
miRNA:   3'- -CCC-GACGagauuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 135251 0.68 0.999265
Target:  5'- uGGGCgcGC-CUAcccg---GGGGGCCCg -3'
miRNA:   3'- -CCCGa-CGaGAUuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 29103 0.68 0.999265
Target:  5'- gGGGCUGCU-----------GGGGCCg -3'
miRNA:   3'- -CCCGACGAgauuuuuaaauUCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 27801 0.68 0.999265
Target:  5'- cGGGCcgUGCaugCUAAuGAUauucuUUGGGGGCgCCg -3'
miRNA:   3'- -CCCG--ACGa--GAUUuUUA-----AAUUCCCG-GG- -5'
5984 3' -46.3 NC_001806.1 + 151752 0.68 0.999091
Target:  5'- gGGGUgUGUUUUGGG-----GGGGGCCCg -3'
miRNA:   3'- -CCCG-ACGAGAUUUuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 42 0.68 0.999091
Target:  5'- gGGGUgUGUUUUGGG-----GGGGGCCCg -3'
miRNA:   3'- -CCCG-ACGAGAUUUuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 25631 0.69 0.997997
Target:  5'- aGGGCUGgggCUGGGGAgggcuGGGGCUg -3'
miRNA:   3'- -CCCGACga-GAUUUUUaaau-UCCCGGg -5'
5984 3' -46.3 NC_001806.1 + 65281 0.69 0.997997
Target:  5'- aGGGUgaaGCgggGAGGAggagGGGGGCCCc -3'
miRNA:   3'- -CCCGa--CGagaUUUUUaaa-UUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 147509 0.69 0.997722
Target:  5'- gGGGCgGCgccgcgg----GAGGGCCCg -3'
miRNA:   3'- -CCCGaCGagauuuuuaaaUUCCCGGG- -5'
5984 3' -46.3 NC_001806.1 + 150169 0.69 0.997595
Target:  5'- cGGCccgGCcCcc--GAUUUGGGGGCCCa -3'
miRNA:   3'- cCCGa--CGaGauuuUUAAAUUCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.