miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 24682 0.67 0.413625
Target:  5'- gGCGGugCgCGCCggcccggCCCGGuGGcgcGGGCCg -3'
miRNA:   3'- -UGUCugG-GCGGaa-----GGGCC-CC---CCCGGg -5'
5984 5' -65.9 NC_001806.1 + 3116 0.67 0.413625
Target:  5'- gGCAGGCgCGgg-UCCCGcGGcagcgcGGGGCCCa -3'
miRNA:   3'- -UGUCUGgGCggaAGGGC-CC------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 28639 0.67 0.413625
Target:  5'- cGCAGGCCCcCCUuacucacacgcaUCuaGGGGGGuggggaggagccGCCCg -3'
miRNA:   3'- -UGUCUGGGcGGA------------AGggCCCCCC------------CGGG- -5'
5984 5' -65.9 NC_001806.1 + 9500 0.67 0.40877
Target:  5'- cCGGAUCCauugguggagggagaGUCgggucUCuCCGGGGGGGCCa -3'
miRNA:   3'- uGUCUGGG---------------CGGa----AG-GGCCCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 20436 0.67 0.406356
Target:  5'- cGCGGGgcucguaucucauuaCCGCCgaaCCGGGaagucGGGGCCCg -3'
miRNA:   3'- -UGUCUg--------------GGCGGaagGGCCC-----CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 1398 0.67 0.405553
Target:  5'- cACGGugCCGCUgcggCCCGuGGccgaGGCCCa -3'
miRNA:   3'- -UGUCugGGCGGaa--GGGCcCCc---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 72510 0.67 0.405553
Target:  5'- cGCGGGCCUGggggagcCCUgcgucggcgugggccCCCGGgaggggguaGGGGGCCCg -3'
miRNA:   3'- -UGUCUGGGC-------GGAa--------------GGGCC---------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 144601 0.67 0.405553
Target:  5'- cCGGGCCCcCCUgcagCCGGGGcGGCCa -3'
miRNA:   3'- uGUCUGGGcGGAag--GGCCCCcCCGGg -5'
5984 5' -65.9 NC_001806.1 + 23482 0.67 0.40395
Target:  5'- cGCAGGCCCGCCcgcgcCCCGuGGccgugucgcgccGGCCCg -3'
miRNA:   3'- -UGUCUGGGCGGaa---GGGCcCCc-----------CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 151533 0.67 0.400757
Target:  5'- gACGGcGCCCGUgggCCCGGgcggccgggggcggcGGGGGCCg -3'
miRNA:   3'- -UGUC-UGGGCGgaaGGGCC---------------CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 10679 0.67 0.39758
Target:  5'- gUAGACCC-CCggUCgcagauggggCCGGGGGGGCg- -3'
miRNA:   3'- uGUCUGGGcGGa-AG----------GGCCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 12608 0.67 0.39758
Target:  5'- cGCAGACCUGaCCccCCCgcacccauuaaGGGGGGGUa- -3'
miRNA:   3'- -UGUCUGGGC-GGaaGGG-----------CCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 21158 0.67 0.39758
Target:  5'- gACGGGCcgCCGCCcaccccgagCCCagaccgcgacgaGcGGGGGGCCCu -3'
miRNA:   3'- -UGUCUG--GGCGGaa-------GGG------------C-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 27070 0.67 0.39758
Target:  5'- -gAGGCCCGUg--CCCGGGcccuGGCCCg -3'
miRNA:   3'- ugUCUGGGCGgaaGGGCCCcc--CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 85757 0.67 0.39758
Target:  5'- cGCGcGGCCaCGUCgu-CCGGGGGGuGCCa -3'
miRNA:   3'- -UGU-CUGG-GCGGaagGGCCCCCC-CGGg -5'
5984 5' -65.9 NC_001806.1 + 33341 0.67 0.39758
Target:  5'- ---cGCCCcuugGCCgcCCCGgcugcaGGGGGGCCCg -3'
miRNA:   3'- ugucUGGG----CGGaaGGGC------CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 144955 0.67 0.39758
Target:  5'- gGCcGGCCC-CCguggcggCCCGGcccGGGGCCCc -3'
miRNA:   3'- -UGuCUGGGcGGaa-----GGGCCc--CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 150701 0.67 0.39758
Target:  5'- cCAGuCCCGCC--CCCGaGGcGGCCCg -3'
miRNA:   3'- uGUCuGGGCGGaaGGGCcCCcCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 149770 0.67 0.396788
Target:  5'- cCAGACauggCGCCcggCCCcucaccucgcgcuGGGGGcGGCCCu -3'
miRNA:   3'- uGUCUGg---GCGGaa-GGG-------------CCCCC-CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 37596 0.68 0.389709
Target:  5'- --uGGCCCGCCagCaCCGGGgcccaGGGGCUa -3'
miRNA:   3'- uguCUGGGCGGaaG-GGCCC-----CCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.