miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 106676 0.66 0.472769
Target:  5'- cGCGGAcgaaaacccCCCGggggcUCUUCCCGGgcccccGGGcGGCCCc -3'
miRNA:   3'- -UGUCU---------GGGC-----GGAAGGGCC------CCC-CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 125550 0.66 0.464053
Target:  5'- cCAGACauuCCGCUaucUCCUGGGGGcacccacGCCCg -3'
miRNA:   3'- uGUCUG---GGCGGa--AGGGCCCCCc------CGGG- -5'
5984 5' -65.9 NC_001806.1 + 59979 0.66 0.464053
Target:  5'- cGCGGcACCUcucugGCCUcggggaCCCGGGGGacGGCCg -3'
miRNA:   3'- -UGUC-UGGG-----CGGAa-----GGGCCCCC--CCGGg -5'
5984 5' -65.9 NC_001806.1 + 27281 0.66 0.464053
Target:  5'- gGCGG--CCGCCagCgCGGcGGGGCCCg -3'
miRNA:   3'- -UGUCugGGCGGaaGgGCCcCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 29516 0.66 0.455422
Target:  5'- cGCGGuACCUGac--CCUGGGGGGGCa- -3'
miRNA:   3'- -UGUC-UGGGCggaaGGGCCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 129684 0.66 0.454564
Target:  5'- aGCGG-CCCGUCUccggacgccUCuCCGgaggcccGGGGGGCCa -3'
miRNA:   3'- -UGUCuGGGCGGA---------AG-GGC-------CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 150866 0.67 0.446878
Target:  5'- cCGGGCCgGC--UCCgCGGGccaGGGCCCg -3'
miRNA:   3'- uGUCUGGgCGgaAGG-GCCCc--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 82006 0.67 0.446878
Target:  5'- -aGGAUCCGUCUcguccgUCCGGcaucuucGGGGCCCa -3'
miRNA:   3'- ugUCUGGGCGGAa-----GGGCCc------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 18494 0.67 0.439266
Target:  5'- cGCAGACagccagggcugggaGCCcUCCU-GGGGGGUCCa -3'
miRNA:   3'- -UGUCUGgg------------CGGaAGGGcCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 9235 0.67 0.438425
Target:  5'- gGCGGG-CgGUCaUgUCGGGGGGGUCCg -3'
miRNA:   3'- -UGUCUgGgCGGaAgGGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 81820 0.67 0.438425
Target:  5'- -aAGACCCcgcaggGCCUgugCCaCGGGcgggaGGGCCCu -3'
miRNA:   3'- ugUCUGGG------CGGAa--GG-GCCCc----CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 53236 0.67 0.436745
Target:  5'- -gGGAUCCGCCcuauuuuccccCCCGGGccgcaccGGGCCCc -3'
miRNA:   3'- ugUCUGGGCGGaa---------GGGCCCc------CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20353 0.67 0.432562
Target:  5'- gGCGGcccuugggccGCCCGCCgUCCCGuuggucccggcguccGgcgggcgggaccgGGGGGCCCg -3'
miRNA:   3'- -UGUC----------UGGGCGGaAGGGC---------------C-------------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 147801 0.67 0.430063
Target:  5'- gGCGGAgCCUGgCaugggCgCCGcGGGGGGCCUg -3'
miRNA:   3'- -UGUCU-GGGCgGaa---G-GGC-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 103183 0.67 0.427573
Target:  5'- -aGGACgaccaccugcuccgCCGCCgucUCCCGGGGGaGGUUa -3'
miRNA:   3'- ugUCUG--------------GGCGGa--AGGGCCCCC-CCGGg -5'
5984 5' -65.9 NC_001806.1 + 779 0.67 0.425091
Target:  5'- uCAGugCCGCCaaucucaggUCagagauccaaacccuCCGGGGGcGCCCg -3'
miRNA:   3'- uGUCugGGCGGa--------AG---------------GGCCCCCcCGGG- -5'
5984 5' -65.9 NC_001806.1 + 148782 0.67 0.421796
Target:  5'- gGCGccCCCGCaacugccgggguCUUCCUcgcgGGGGGGGCUCc -3'
miRNA:   3'- -UGUcuGGGCG------------GAAGGG----CCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 56908 0.67 0.421796
Target:  5'- uCAG-CCCGCCgacgaccaUCCCcaGGGugccgacgaacaGGGGCCCc -3'
miRNA:   3'- uGUCuGGGCGGa-------AGGG--CCC------------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 18431 0.67 0.421796
Target:  5'- gGCGcGACCCGCCccagaaUCGGauGGGCCCg -3'
miRNA:   3'- -UGU-CUGGGCGGaag---GGCCccCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 24682 0.67 0.413625
Target:  5'- gGCGGugCgCGCCggcccggCCCGGuGGcgcGGGCCg -3'
miRNA:   3'- -UGUCugG-GCGGaa-----GGGCC-CC---CCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.