miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 144989 0.72 0.207595
Target:  5'- gGCGGACCCaagggGCCccggCCCGGGGccccacaacGGCCCg -3'
miRNA:   3'- -UGUCUGGG-----CGGaa--GGGCCCCc--------CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 57019 0.72 0.217356
Target:  5'- cCAGugCCaggcacugggugGCCgggCCCGGGgccGGGGCCCc -3'
miRNA:   3'- uGUCugGG------------CGGaa-GGGCCC---CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 15845 0.72 0.222382
Target:  5'- cACGGGCCC-CUUUUggggCCGcGGGGGGCCg -3'
miRNA:   3'- -UGUCUGGGcGGAAG----GGC-CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 22111 0.72 0.222382
Target:  5'- gACAGccGCCCggGCCU--CUGGGGGGcGCCCg -3'
miRNA:   3'- -UGUC--UGGG--CGGAagGGCCCCCC-CGGG- -5'
5984 5' -65.9 NC_001806.1 + 132493 0.72 0.222382
Target:  5'- cACGGuCCaCGCCgccCCCGGGGcccuGGCCCc -3'
miRNA:   3'- -UGUCuGG-GCGGaa-GGGCCCCc---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 6061 0.72 0.222382
Target:  5'- --cGACUccgCGCCggcCCCGGGGgcGGGCCCg -3'
miRNA:   3'- uguCUGG---GCGGaa-GGGCCCC--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 150165 0.71 0.227506
Target:  5'- uGCAcGGCCCgGCC--CCCGauuuGGGGGCCCa -3'
miRNA:   3'- -UGU-CUGGG-CGGaaGGGCc---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 72609 0.71 0.231152
Target:  5'- cCGGGCCCgucgcgacgacaggGCCUccgagacaUCCCGGGGGacGGCCg -3'
miRNA:   3'- uGUCUGGG--------------CGGA--------AGGGCCCCC--CCGGg -5'
5984 5' -65.9 NC_001806.1 + 78524 0.71 0.238055
Target:  5'- gGCAGACgCUgaGCCc-CUCGGGGGGGCgCg -3'
miRNA:   3'- -UGUCUG-GG--CGGaaGGGCCCCCCCGgG- -5'
5984 5' -65.9 NC_001806.1 + 736 0.71 0.24901
Target:  5'- gGCGcGuCCCGCgCUcCCuCGGGGGGGUUCg -3'
miRNA:   3'- -UGU-CuGGGCG-GAaGG-GCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 28 0.71 0.24901
Target:  5'- cGCGcGACCCccgggggguGUgUUUUgGGGGGGGCCCg -3'
miRNA:   3'- -UGU-CUGGG---------CGgAAGGgCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 151738 0.71 0.24901
Target:  5'- cGCGcGACCCccgggggguGUgUUUUgGGGGGGGCCCg -3'
miRNA:   3'- -UGU-CUGGG---------CGgAAGGgCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 30401 0.71 0.260378
Target:  5'- cGguGGCgCGCgg-CUCGGGGGGGCCg -3'
miRNA:   3'- -UguCUGgGCGgaaGGGCCCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 44836 0.71 0.260378
Target:  5'- --cGACCCGCagggUCCCGGGGGcaaauuCCCg -3'
miRNA:   3'- uguCUGGGCGga--AGGGCCCCCcc----GGG- -5'
5984 5' -65.9 NC_001806.1 + 114064 0.7 0.26622
Target:  5'- gAUGGuGCCCGCCUUCUCGc-GGGGCCg -3'
miRNA:   3'- -UGUC-UGGGCGGAAGGGCccCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 142221 0.7 0.26622
Target:  5'- uGCAGGCCCGCUUcaucgUCCGGcGgcagaaccGGGGUCCg -3'
miRNA:   3'- -UGUCUGGGCGGAa----GGGCC-C--------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 71800 0.7 0.272166
Target:  5'- cCAGuucgcGCCCGaCCUggagCCGGGGGGGUCg -3'
miRNA:   3'- uGUC-----UGGGC-GGAag--GGCCCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 93855 0.7 0.272166
Target:  5'- cGCAcGCgCCGCCgacUCCCGGcuugccggucGGcGGGCCCg -3'
miRNA:   3'- -UGUcUG-GGCGGa--AGGGCC----------CC-CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 47174 0.7 0.272166
Target:  5'- cGCGGACggcgcuucgccaCCGCCcccccgCCCGGccGGGGGUCCc -3'
miRNA:   3'- -UGUCUG------------GGCGGaa----GGGCC--CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 22067 0.7 0.278219
Target:  5'- cCGGGCCC-CCgccCCCGGGGcGGGUgCu -3'
miRNA:   3'- uGUCUGGGcGGaa-GGGCCCC-CCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.