miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 135249 0.79 0.066417
Target:  5'- gAUGGGCgCGCCUaCCC-GGGGGGCCCg -3'
miRNA:   3'- -UGUCUGgGCGGAaGGGcCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 38397 0.79 0.069828
Target:  5'- gGCGGcucUCCGCCggCUCGGGGGGGUCCu -3'
miRNA:   3'- -UGUCu--GGGCGGaaGGGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 44118 0.78 0.075263
Target:  5'- cCGGuCCCGCgCUcgCUCGGGGGGGCCUc -3'
miRNA:   3'- uGUCuGGGCG-GAa-GGGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 122559 0.76 0.103841
Target:  5'- --uGGCCCG-UUUUuuGGGGGGGCCCg -3'
miRNA:   3'- uguCUGGGCgGAAGggCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 4168 0.76 0.114523
Target:  5'- uACAGcACCCGCC--CCgGGggcGGGGGCCCg -3'
miRNA:   3'- -UGUC-UGGGCGGaaGGgCC---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 95419 0.75 0.135717
Target:  5'- -aAGACCguCGCCgcgggCCCGGGgggcaGGGGCCCg -3'
miRNA:   3'- ugUCUGG--GCGGaa---GGGCCC-----CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 111471 0.75 0.135717
Target:  5'- cACAGcauccCCCGCCUUUuuGGGuccGGGCCCg -3'
miRNA:   3'- -UGUCu----GGGCGGAAGggCCCc--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 23929 0.75 0.139024
Target:  5'- -aGGACCUgGCCggcggcggggCCUGGGGGGGCCg -3'
miRNA:   3'- ugUCUGGG-CGGaa--------GGGCCCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 20154 0.74 0.142405
Target:  5'- -gAGACCCGCCccccgccgCCCGGGcccgcccccGGGGCCg -3'
miRNA:   3'- ugUCUGGGCGGaa------GGGCCC---------CCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 22694 0.74 0.145862
Target:  5'- gGCGGcuguccgccgcGCCCGCCUccCCCGcGGGGGGCg- -3'
miRNA:   3'- -UGUC-----------UGGGCGGAa-GGGC-CCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 354 0.74 0.147266
Target:  5'- ---cGCCCGCCUuuUuugcgcgcgcgcgcgCCCGcGGGGGGCCCg -3'
miRNA:   3'- ugucUGGGCGGA--A---------------GGGC-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 152064 0.74 0.147266
Target:  5'- ---cGCCCGCCUuuUuugcgcgcgcgcgcgCCCGcGGGGGGCCCg -3'
miRNA:   3'- ugucUGGGCGGA--A---------------GGGC-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 151665 0.74 0.164315
Target:  5'- uGCuuGCCUGUCUaacucgcuagucUCggCCGGGGGGGCCCg -3'
miRNA:   3'- -UGucUGGGCGGA------------AG--GGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20313 0.73 0.168249
Target:  5'- gGCGGucccGCCCGCCggCCaauGGGGGGGCg- -3'
miRNA:   3'- -UGUC----UGGGCGGaaGGg--CCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 22864 0.73 0.175957
Target:  5'- gGC-GACCUggcgGCCgUCCCGGGgcuggccGGGGCCCg -3'
miRNA:   3'- -UGuCUGGG----CGGaAGGGCCC-------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 38694 0.73 0.180562
Target:  5'- --cGuuCCGCCc-CCCGGGcGGGGCCCc -3'
miRNA:   3'- uguCugGGCGGaaGGGCCC-CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 132541 0.73 0.183977
Target:  5'- -gGGGCCCGaguuugaggUCCGGGGGGGaCCCg -3'
miRNA:   3'- ugUCUGGGCggaa-----GGGCCCCCCC-GGG- -5'
5984 5' -65.9 NC_001806.1 + 65460 0.73 0.189208
Target:  5'- cGCGG-CCC-CCgggUCCUGGGGGcGCCCg -3'
miRNA:   3'- -UGUCuGGGcGGa--AGGGCCCCCcCGGG- -5'
5984 5' -65.9 NC_001806.1 + 76960 0.73 0.189208
Target:  5'- --cGG-CCGCgUUCgCGGGGGGGCCUg -3'
miRNA:   3'- uguCUgGGCGgAAGgGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 81772 0.72 0.201922
Target:  5'- -gAGuCCCGCCgccaaaacgagCgCGGGGGGGCCa -3'
miRNA:   3'- ugUCuGGGCGGaa---------GgGCCCCCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.