miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 28 0.71 0.24901
Target:  5'- cGCGcGACCCccgggggguGUgUUUUgGGGGGGGCCCg -3'
miRNA:   3'- -UGU-CUGGG---------CGgAAGGgCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 354 0.74 0.147266
Target:  5'- ---cGCCCGCCUuuUuugcgcgcgcgcgcgCCCGcGGGGGGCCCg -3'
miRNA:   3'- ugucUGGGCGGA--A---------------GGGC-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 736 0.71 0.24901
Target:  5'- gGCGcGuCCCGCgCUcCCuCGGGGGGGUUCg -3'
miRNA:   3'- -UGU-CuGGGCG-GAaGG-GCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 779 0.67 0.425091
Target:  5'- uCAGugCCGCCaaucucaggUCagagauccaaacccuCCGGGGGcGCCCg -3'
miRNA:   3'- uGUCugGGCGGa--------AG---------------GGCCCCCcCGGG- -5'
5984 5' -65.9 NC_001806.1 + 1398 0.67 0.405553
Target:  5'- cACGGugCCGCUgcggCCCGuGGccgaGGCCCa -3'
miRNA:   3'- -UGUCugGGCGGaa--GGGCcCCc---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 2271 0.66 0.508418
Target:  5'- gACAG-CCCGCCgcgCUCGGcGGaccacuccggcGGCCCc -3'
miRNA:   3'- -UGUCuGGGCGGaa-GGGCCcCC-----------CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 2672 0.69 0.300897
Target:  5'- cGCGGGCgCCGCCguguggcugggcCCCGGGGGcuGCCg -3'
miRNA:   3'- -UGUCUG-GGCGGaa----------GGGCCCCCc-CGGg -5'
5984 5' -65.9 NC_001806.1 + 2773 0.69 0.310094
Target:  5'- gGCGGGCCugCGCCgcggcggCCCGGGGcgccgcGGGCUg -3'
miRNA:   3'- -UGUCUGG--GCGGaa-----GGGCCCC------CCCGGg -5'
5984 5' -65.9 NC_001806.1 + 2925 0.66 0.472769
Target:  5'- cGCGGGCcgCCGCC-UCCgGGcGGccGGGCCg -3'
miRNA:   3'- -UGUCUG--GGCGGaAGGgCC-CC--CCCGGg -5'
5984 5' -65.9 NC_001806.1 + 3116 0.67 0.413625
Target:  5'- gGCAGGCgCGgg-UCCCGcGGcagcgcGGGGCCCa -3'
miRNA:   3'- -UGUCUGgGCggaAGGGC-CC------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 3325 0.68 0.374276
Target:  5'- -gGGGCCCGCgggUCCCuccggccgcGGGGGGCUg -3'
miRNA:   3'- ugUCUGGGCGga-AGGGc--------CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 4168 0.76 0.114523
Target:  5'- uACAGcACCCGCC--CCgGGggcGGGGGCCCg -3'
miRNA:   3'- -UGUC-UGGGCGGaaGGgCC---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 4377 0.68 0.359262
Target:  5'- cGCGGGggucCUCGCCgccgCCCGGGGcuuGGGCgCg -3'
miRNA:   3'- -UGUCU----GGGCGGaa--GGGCCCC---CCCGgG- -5'
5984 5' -65.9 NC_001806.1 + 4720 0.7 0.284379
Target:  5'- aGCGGGgccuCCCGUUcgcggcCCCGGGccGGGGCCCg -3'
miRNA:   3'- -UGUCU----GGGCGGaa----GGGCCC--CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 4929 0.66 0.490443
Target:  5'- gGCGucCUCGCCggcgucggugCCCGccgcGGGGGCCCu -3'
miRNA:   3'- -UGUcuGGGCGGaa--------GGGCc---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 5094 0.68 0.389709
Target:  5'- gGCGGcgGCCCGUCgguggggCCCGGGgagccGGGGCgCu -3'
miRNA:   3'- -UGUC--UGGGCGGaa-----GGGCCC-----CCCCGgG- -5'
5984 5' -65.9 NC_001806.1 + 5510 0.69 0.316793
Target:  5'- aGCGGAggccgccggcccCCCGCCccCCCGGc-GGGCCCa -3'
miRNA:   3'- -UGUCU------------GGGCGGaaGGGCCccCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 5569 0.69 0.310094
Target:  5'- uGCAcGAcCCCGCCccgaCgCCGGcacgccGGGGGCCCg -3'
miRNA:   3'- -UGU-CU-GGGCGGaa--G-GGCC------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 6061 0.72 0.222382
Target:  5'- --cGACUccgCGCCggcCCCGGGGgcGGGCCCg -3'
miRNA:   3'- uguCUGG---GCGGaa-GGGCCCC--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 6306 0.66 0.476278
Target:  5'- -aAGACCCGCCcaCCCcacccacgaaacacaGGggacgcaccccGGGGGCCUc -3'
miRNA:   3'- ugUCUGGGCGGaaGGG---------------CC-----------CCCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.