miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 9235 0.67 0.438425
Target:  5'- gGCGGG-CgGUCaUgUCGGGGGGGUCCg -3'
miRNA:   3'- -UGUCUgGgCGGaAgGGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 9500 0.67 0.40877
Target:  5'- cCGGAUCCauugguggagggagaGUCgggucUCuCCGGGGGGGCCa -3'
miRNA:   3'- uGUCUGGG---------------CGGa----AG-GGCCCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 10679 0.67 0.39758
Target:  5'- gUAGACCC-CCggUCgcagauggggCCGGGGGGGCg- -3'
miRNA:   3'- uGUCUGGGcGGa-AG----------GGCCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 12608 0.67 0.39758
Target:  5'- cGCAGACCUGaCCccCCCgcacccauuaaGGGGGGGUa- -3'
miRNA:   3'- -UGUCUGGGC-GGaaGGG-----------CCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 15845 0.72 0.222382
Target:  5'- cACGGGCCC-CUUUUggggCCGcGGGGGGCCg -3'
miRNA:   3'- -UGUCUGGGcGGAAG----GGC-CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 18431 0.67 0.421796
Target:  5'- gGCGcGACCCGCCccagaaUCGGauGGGCCCg -3'
miRNA:   3'- -UGU-CUGGGCGGaag---GGCCccCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 18494 0.67 0.439266
Target:  5'- cGCAGACagccagggcugggaGCCcUCCU-GGGGGGUCCa -3'
miRNA:   3'- -UGUCUGgg------------CGGaAGGGcCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 19335 0.69 0.330517
Target:  5'- cCAGAaaaaaCCGCCc-CCCaagccuccGGGGGGCCCu -3'
miRNA:   3'- uGUCUg----GGCGGaaGGGc-------CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20154 0.74 0.142405
Target:  5'- -gAGACCCGCCccccgccgCCCGGGcccgcccccGGGGCCg -3'
miRNA:   3'- ugUCUGGGCGGaa------GGGCCC---------CCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 20313 0.73 0.168249
Target:  5'- gGCGGucccGCCCGCCggCCaauGGGGGGGCg- -3'
miRNA:   3'- -UGUC----UGGGCGGaaGGg--CCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 20353 0.67 0.432562
Target:  5'- gGCGGcccuugggccGCCCGCCgUCCCGuuggucccggcguccGgcgggcgggaccgGGGGGCCCg -3'
miRNA:   3'- -UGUC----------UGGGCGGaAGGGC---------------C-------------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20436 0.67 0.406356
Target:  5'- cGCGGGgcucguaucucauuaCCGCCgaaCCGGGaagucGGGGCCCg -3'
miRNA:   3'- -UGUCUg--------------GGCGGaagGGCCC-----CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20718 0.68 0.359262
Target:  5'- -uGGGCCCGCCggggggGcGGGGGGCCg -3'
miRNA:   3'- ugUCUGGGCGGaaggg-C-CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 21158 0.67 0.39758
Target:  5'- gACGGGCcgCCGCCcaccccgagCCCagaccgcgacgaGcGGGGGGCCCu -3'
miRNA:   3'- -UGUCUG--GGCGGaa-------GGG------------C-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 21490 0.66 0.472769
Target:  5'- aGCcGACgCCGCCggcgaCCGGGccccggcccGGGGCCg -3'
miRNA:   3'- -UGuCUG-GGCGGaag--GGCCC---------CCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 22067 0.7 0.278219
Target:  5'- cCGGGCCC-CCgccCCCGGGGcGGGUgCu -3'
miRNA:   3'- uGUCUGGGcGGaa-GGGCCCC-CCCGgG- -5'
5984 5' -65.9 NC_001806.1 + 22111 0.72 0.222382
Target:  5'- gACAGccGCCCggGCCU--CUGGGGGGcGCCCg -3'
miRNA:   3'- -UGUC--UGGG--CGGAagGGCCCCCC-CGGG- -5'
5984 5' -65.9 NC_001806.1 + 22694 0.74 0.145862
Target:  5'- gGCGGcuguccgccgcGCCCGCCUccCCCGcGGGGGGCg- -3'
miRNA:   3'- -UGUC-----------UGGGCGGAa-GGGC-CCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 22864 0.73 0.175957
Target:  5'- gGC-GACCUggcgGCCgUCCCGGGgcuggccGGGGCCCg -3'
miRNA:   3'- -UGuCUGGG----CGGaAGGGCCC-------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 23086 0.66 0.472769
Target:  5'- uGCGcGCCgugaGCCUggUCgCCGGGGcccuGGGCCCc -3'
miRNA:   3'- -UGUcUGGg---CGGA--AG-GGCCCC----CCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.