miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 39193 0.66 0.499394
Target:  5'- gGCGGcCuuGUCUgcguUCuuGGGGgccGGGCCCc -3'
miRNA:   3'- -UGUCuGggCGGA----AGggCCCC---CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 26956 0.66 0.499394
Target:  5'- uCGGccGCCCGCCUggcgCgCCGcGGcucguGGGCCCg -3'
miRNA:   3'- uGUC--UGGGCGGAa---G-GGC-CCc----CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 149821 0.66 0.490443
Target:  5'- gGCGGguACUCGC--UCCgGGGcGGGGCuCCa -3'
miRNA:   3'- -UGUC--UGGGCGgaAGGgCCC-CCCCG-GG- -5'
5984 5' -65.9 NC_001806.1 + 132832 0.66 0.490443
Target:  5'- uUAGACCCGCC--CgCGGccgucGGGCCCg -3'
miRNA:   3'- uGUCUGGGCGGaaGgGCCcc---CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 4929 0.66 0.490443
Target:  5'- gGCGucCUCGCCggcgucggugCCCGccgcGGGGGCCCu -3'
miRNA:   3'- -UGUcuGGGCGGaa--------GGGCc---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 84416 0.66 0.481567
Target:  5'- gGCuGACCCcgagacGCag-CCCGGggacGGGGGCCg -3'
miRNA:   3'- -UGuCUGGG------CGgaaGGGCC----CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 103183 0.67 0.427573
Target:  5'- -aGGACgaccaccugcuccgCCGCCgucUCCCGGGGGaGGUUa -3'
miRNA:   3'- ugUCUG--------------GGCGGa--AGGGCCCCC-CCGGg -5'
5984 5' -65.9 NC_001806.1 + 779 0.67 0.425091
Target:  5'- uCAGugCCGCCaaucucaggUCagagauccaaacccuCCGGGGGcGCCCg -3'
miRNA:   3'- uGUCugGGCGGa--------AG---------------GGCCCCCcCGGG- -5'
5984 5' -65.9 NC_001806.1 + 148782 0.67 0.421796
Target:  5'- gGCGccCCCGCaacugccgggguCUUCCUcgcgGGGGGGGCUCc -3'
miRNA:   3'- -UGUcuGGGCG------------GAAGGG----CCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 56908 0.67 0.421796
Target:  5'- uCAG-CCCGCCgacgaccaUCCCcaGGGugccgacgaacaGGGGCCCc -3'
miRNA:   3'- uGUCuGGGCGGa-------AGGG--CCC------------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 18431 0.67 0.421796
Target:  5'- gGCGcGACCCGCCccagaaUCGGauGGGCCCg -3'
miRNA:   3'- -UGU-CUGGGCGGaag---GGCCccCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 82162 0.67 0.413625
Target:  5'- gACAGcCCCGUCgUCUCGGuGGaGCCCa -3'
miRNA:   3'- -UGUCuGGGCGGaAGGGCCcCCcCGGG- -5'
5984 5' -65.9 NC_001806.1 + 147801 0.67 0.430063
Target:  5'- gGCGGAgCCUGgCaugggCgCCGcGGGGGGCCUg -3'
miRNA:   3'- -UGUCU-GGGCgGaa---G-GGC-CCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 20353 0.67 0.432562
Target:  5'- gGCGGcccuugggccGCCCGCCgUCCCGuuggucccggcguccGgcgggcgggaccgGGGGGCCCg -3'
miRNA:   3'- -UGUC----------UGGGCGGaAGGGC---------------C-------------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 53236 0.67 0.436745
Target:  5'- -gGGAUCCGCCcuauuuuccccCCCGGGccgcaccGGGCCCc -3'
miRNA:   3'- ugUCUGGGCGGaa---------GGGCCCc------CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 9235 0.67 0.438425
Target:  5'- gGCGGG-CgGUCaUgUCGGGGGGGUCCg -3'
miRNA:   3'- -UGUCUgGgCGGaAgGGCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 81820 0.67 0.438425
Target:  5'- -aAGACCCcgcaggGCCUgugCCaCGGGcgggaGGGCCCu -3'
miRNA:   3'- ugUCUGGG------CGGAa--GG-GCCCc----CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 18494 0.67 0.439266
Target:  5'- cGCAGACagccagggcugggaGCCcUCCU-GGGGGGUCCa -3'
miRNA:   3'- -UGUCUGgg------------CGGaAGGGcCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 82006 0.67 0.446878
Target:  5'- -aGGAUCCGUCUcguccgUCCGGcaucuucGGGGCCCa -3'
miRNA:   3'- ugUCUGGGCGGAa-----GGGCCc------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 24682 0.67 0.413625
Target:  5'- gGCGGugCgCGCCggcccggCCCGGuGGcgcGGGCCg -3'
miRNA:   3'- -UGUCugG-GCGGaa-----GGGCC-CC---CCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.