miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 125942 0.77 0.309828
Target:  5'- gCCCUgcuccggCGGGGCCucACGACCGCAu -3'
miRNA:   3'- aGGGGaaua---GCCCCGGu-UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 112796 0.76 0.35453
Target:  5'- cCCCCUgg-UGGGcGCCAugGACCugAc -3'
miRNA:   3'- aGGGGAauaGCCC-CGGUugCUGGugU- -5'
5985 3' -56.6 NC_001806.1 + 145393 0.76 0.378528
Target:  5'- cCCCCUUAUCuaaGGGCCGGCuggaaGACCGCc -3'
miRNA:   3'- aGGGGAAUAGc--CCCGGUUG-----CUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 51775 0.74 0.445805
Target:  5'- aCCCCguucaagagCGGGGCCGugGCGGCCAa- -3'
miRNA:   3'- aGGGGaaua-----GCCCCGGU--UGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 113457 0.74 0.447617
Target:  5'- -gCCgUUcgCGGGGCguuCGACGACCGCAa -3'
miRNA:   3'- agGGgAAuaGCCCCG---GUUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 97810 0.74 0.484682
Target:  5'- cCCCCgccgccCGGGGCCAGCG-CCAa- -3'
miRNA:   3'- aGGGGaaua--GCCCCGGUUGCuGGUgu -5'
5985 3' -56.6 NC_001806.1 + 146663 0.72 0.542827
Target:  5'- cUCCCCggaccaCGGGuGCCGA-GACCGCAg -3'
miRNA:   3'- -AGGGGaaua--GCCC-CGGUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 54500 0.72 0.542827
Target:  5'- gUCCCUggGUgGGGGCUggUGACUGCc -3'
miRNA:   3'- -AGGGGaaUAgCCCCGGuuGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 50090 0.72 0.56274
Target:  5'- gUCCC--GUCGGGGCCG-CGGCCGu- -3'
miRNA:   3'- aGGGGaaUAGCCCCGGUuGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 89261 0.72 0.576795
Target:  5'- gUCCCCggcuggcuccgCGaGGGCCGGCGGgCGCAa -3'
miRNA:   3'- -AGGGGaaua-------GC-CCCGGUUGCUgGUGU- -5'
5985 3' -56.6 NC_001806.1 + 144782 0.72 0.582843
Target:  5'- gUCCCCUca-CGGGGCgAA-GGCCGCGu -3'
miRNA:   3'- -AGGGGAauaGCCCCGgUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 48297 0.71 0.603087
Target:  5'- cCCCCgaagaggCGGGGCUGGCGGcuCCGCGc -3'
miRNA:   3'- aGGGGaaua---GCCCCGGUUGCU--GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 71106 0.71 0.623415
Target:  5'- cCCCCU-----GGGCCAGaCGACCGCGg -3'
miRNA:   3'- aGGGGAauagcCCCGGUU-GCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 91152 0.71 0.653937
Target:  5'- gCCgCUguUCGaGGGCCAggacACGGCCGCGg -3'
miRNA:   3'- aGGgGAauAGC-CCCGGU----UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 90997 0.7 0.664087
Target:  5'- aCCCCg---CGGGGCgGgcGCGACgGCGg -3'
miRNA:   3'- aGGGGaauaGCCCCGgU--UGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 23204 0.7 0.664087
Target:  5'- cCCCCUgcuggcggCGGcGGCCAGCGcACCGg- -3'
miRNA:   3'- aGGGGAaua-----GCC-CCGGUUGC-UGGUgu -5'
5985 3' -56.6 NC_001806.1 + 73048 0.7 0.664087
Target:  5'- cCCCC--GUCGGGGCC-GCGGuccCCGCc -3'
miRNA:   3'- aGGGGaaUAGCCCCGGuUGCU---GGUGu -5'
5985 3' -56.6 NC_001806.1 + 32971 0.7 0.674212
Target:  5'- gCCCCUUGgguccgcCGGGGCCccgggccgGGCcGCCACGg -3'
miRNA:   3'- aGGGGAAUa------GCCCCGG--------UUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 145003 0.7 0.684303
Target:  5'- gCCCCggccCGGGGCCccacAACGGCC-CGg -3'
miRNA:   3'- aGGGGaauaGCCCCGG----UUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 122276 0.69 0.724151
Target:  5'- aUCCCCcgaaaGGaGGCCAGCGACaGCGc -3'
miRNA:   3'- -AGGGGaauagCC-CCGGUUGCUGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.