miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 2720 0.69 0.75706
Target:  5'- gCCCaggggGUCGGGGCCcucGgcgggccggcgcgacACGGCCACGg -3'
miRNA:   3'- aGGGgaa--UAGCCCCGG---U---------------UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 2977 0.66 0.879874
Target:  5'- gCCCCUcccgcggcgCGGGGaggcggCGGCGGCCGCc -3'
miRNA:   3'- aGGGGAaua------GCCCCg-----GUUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 3127 0.67 0.857784
Target:  5'- gUCCCgCggcagcgCGGGGCCcagggccccGGCGACCAg- -3'
miRNA:   3'- -AGGG-Gaaua---GCCCCGG---------UUGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 3763 0.69 0.761802
Target:  5'- gCCCUUcugcgcgcggucgUAUCGGcGGCUcAUGGCCACGg -3'
miRNA:   3'- aGGGGA-------------AUAGCC-CCGGuUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 4178 0.68 0.772132
Target:  5'- gCCCCgggggCGGGGgcCCGGCGccggGCCACGg -3'
miRNA:   3'- aGGGGaaua-GCCCC--GGUUGC----UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 6344 0.68 0.808347
Target:  5'- aCCCCg----GGGGCCucCGACgACAg -3'
miRNA:   3'- aGGGGaauagCCCCGGuuGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 7793 0.66 0.865357
Target:  5'- cCCCCggcuacaGGGGCCAuguuggGCcGCCACGc -3'
miRNA:   3'- aGGGGaauag--CCCCGGU------UGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 14047 0.67 0.85001
Target:  5'- -aUCUUUAUUgGGGGCCGG-GGCCACGg -3'
miRNA:   3'- agGGGAAUAG-CCCCGGUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 15005 0.68 0.768392
Target:  5'- gUCCCUUUgaggugaGUCGGGucguggggcgaguuGCCAGCGGCC-CGa -3'
miRNA:   3'- -AGGGGAA-------UAGCCC--------------CGGUUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 15850 0.69 0.724151
Target:  5'- gCCCCUU-UUGGGGCCGcggGgGGCCGa- -3'
miRNA:   3'- aGGGGAAuAGCCCCGGU---UgCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 18086 0.67 0.84204
Target:  5'- aCCCac-AUCGccGGGCCGugGuCCGCAa -3'
miRNA:   3'- aGGGgaaUAGC--CCCGGUugCuGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 19349 0.67 0.857784
Target:  5'- cCCCCaagccUCcggGGGGCCcuACGGCCACc -3'
miRNA:   3'- aGGGGaau--AG---CCCCGGu-UGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 21512 0.66 0.900004
Target:  5'- gCCCCggccCGGGGCC-GCGAacgggaggccCCGCu -3'
miRNA:   3'- aGGGGaauaGCCCCGGuUGCU----------GGUGu -5'
5985 3' -56.6 NC_001806.1 + 22072 0.68 0.817028
Target:  5'- cCCCCgccccCGGGGCgggugcuguaCGGCGGCCugGg -3'
miRNA:   3'- aGGGGaaua-GCCCCG----------GUUGCUGGugU- -5'
5985 3' -56.6 NC_001806.1 + 22716 0.67 0.833881
Target:  5'- cUCCCCcgcg-GGGGgCGACGACCcCGa -3'
miRNA:   3'- -AGGGGaauagCCCCgGUUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 23204 0.7 0.664087
Target:  5'- cCCCCUgcuggcggCGGcGGCCAGCGcACCGg- -3'
miRNA:   3'- aGGGGAaua-----GCC-CCGGUUGC-UGGUgu -5'
5985 3' -56.6 NC_001806.1 + 23537 0.67 0.84204
Target:  5'- cCCCCUg---GGcGGCUGGCGGCgGCAg -3'
miRNA:   3'- aGGGGAauagCC-CCGGUUGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 23788 0.69 0.762747
Target:  5'- aCCCCca--CGGGGCCGccgGgGGCCGCc -3'
miRNA:   3'- aGGGGaauaGCCCCGGU---UgCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 26937 0.67 0.857784
Target:  5'- gCCaCCUggUGUCuGGGCCu-CGGCCGCc -3'
miRNA:   3'- aGG-GGA--AUAGcCCCGGuuGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 27785 0.67 0.833881
Target:  5'- cCCCCaaAUCgGGGGCCGGgcCGugCAUg -3'
miRNA:   3'- aGGGGaaUAG-CCCCGGUU--GCugGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.