miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 150973 0.66 0.879874
Target:  5'- -gCCCgc-UCGcGGGCCcACGAgCCGCGg -3'
miRNA:   3'- agGGGaauAGC-CCCGGuUGCU-GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 147976 0.67 0.825541
Target:  5'- cCCCCgga--GGGGCCAgacgccccccGCGgcGCCGCGg -3'
miRNA:   3'- aGGGGaauagCCCCGGU----------UGC--UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 147707 0.67 0.826384
Target:  5'- gCCCCggagGcggcgcucgcacgcaCGGGGCC-ACGGCCGCGc -3'
miRNA:   3'- aGGGGaa--Ua--------------GCCCCGGuUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 147231 0.69 0.753247
Target:  5'- cCCCCgcggggGUCGGGGCCGAgGAg---- -3'
miRNA:   3'- aGGGGaa----UAGCCCCGGUUgCUggugu -5'
5985 3' -56.6 NC_001806.1 + 146663 0.72 0.542827
Target:  5'- cUCCCCggaccaCGGGuGCCGA-GACCGCAg -3'
miRNA:   3'- -AGGGGaaua--GCCC-CGGUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 145393 0.76 0.378528
Target:  5'- cCCCCUUAUCuaaGGGCCGGCuggaaGACCGCc -3'
miRNA:   3'- aGGGGAAUAGc--CCCGGUUG-----CUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 145003 0.7 0.684303
Target:  5'- gCCCCggccCGGGGCCccacAACGGCC-CGg -3'
miRNA:   3'- aGGGGaauaGCCCCGG----UUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 144811 0.68 0.808347
Target:  5'- -gCCCgggacgaGGGGCCccCGACCGCGg -3'
miRNA:   3'- agGGGaauag--CCCCGGuuGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 144782 0.72 0.582843
Target:  5'- gUCCCCUca-CGGGGCgAA-GGCCGCGu -3'
miRNA:   3'- -AGGGGAauaGCCCCGgUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 134962 0.68 0.772132
Target:  5'- aCCCCUcAUCGucGGCCGucgcgGCGGCCAUc -3'
miRNA:   3'- aGGGGAaUAGCc-CCGGU-----UGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 133604 0.69 0.753247
Target:  5'- cCCCCU--UUGaGGCCAGCGACCc-- -3'
miRNA:   3'- aGGGGAauAGCcCCGGUUGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 132648 0.69 0.724151
Target:  5'- -aCCUggugcgCGGGGCCG-CGGCCGCu -3'
miRNA:   3'- agGGGaaua--GCCCCGGUuGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 129865 0.66 0.889519
Target:  5'- cCCCCUcGgggacgugaccacgUGGGGCCAAU-ACCGCGu -3'
miRNA:   3'- aGGGGAaUa-------------GCCCCGGUUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 125942 0.77 0.309828
Target:  5'- gCCCUgcuccggCGGGGCCucACGACCGCAu -3'
miRNA:   3'- aGGGGaaua---GCCCCGGu-UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 125884 0.68 0.808347
Target:  5'- gCCCCUca-UGGGGUUuuacgaGGCGGCCACGc -3'
miRNA:   3'- aGGGGAauaGCCCCGG------UUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 122276 0.69 0.724151
Target:  5'- aUCCCCcgaaaGGaGGCCAGCGACaGCGc -3'
miRNA:   3'- -AGGGGaauagCC-CCGGUUGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 121662 0.67 0.85001
Target:  5'- gCCCCgUGUCuGuGGGCCAagAUGGCC-CAg -3'
miRNA:   3'- aGGGGaAUAG-C-CCCGGU--UGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 114358 0.67 0.85001
Target:  5'- -gCCCgacgCGGGcGCCAAC-ACCGCGu -3'
miRNA:   3'- agGGGaauaGCCC-CGGUUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 113904 0.66 0.900004
Target:  5'- aCCCCgugUAcgCGGcGGCauguaacguGGCGACCGCGg -3'
miRNA:   3'- aGGGGa--AUa-GCC-CCGg--------UUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 113457 0.74 0.447617
Target:  5'- -gCCgUUcgCGGGGCguuCGACGACCGCAa -3'
miRNA:   3'- agGGgAAuaGCCCCG---GUUGCUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.