miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 27844 0.66 0.900004
Target:  5'- gUCCCCggggaCGGGGCCGcc--CCGCGg -3'
miRNA:   3'- -AGGGGaaua-GCCCCGGUugcuGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 30280 0.68 0.790522
Target:  5'- gCCCCggccccCGGGGCgGAgcCGGCCGCc -3'
miRNA:   3'- aGGGGaaua--GCCCCGgUU--GCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 30582 0.66 0.869801
Target:  5'- cCCCCUcgcgccggcaGGGGCCAagaggGCGGCgACGc -3'
miRNA:   3'- aGGGGAauag------CCCCGGU-----UGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 32971 0.7 0.674212
Target:  5'- gCCCCUUGgguccgcCGGGGCCccgggccgGGCcGCCACGg -3'
miRNA:   3'- aGGGGAAUa------GCCCCGG--------UUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 33149 0.66 0.872722
Target:  5'- gCCCCUcGUCccGGGCCGuacGCGGCCu-- -3'
miRNA:   3'- aGGGGAaUAGc-CCCGGU---UGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 35684 0.67 0.84204
Target:  5'- aCCUCUUGUCGGGccucCCGACGuacGCCGa- -3'
miRNA:   3'- aGGGGAAUAGCCCc---GGUUGC---UGGUgu -5'
5985 3' -56.6 NC_001806.1 + 39171 0.67 0.833881
Target:  5'- gCCCCUUGgaucgcccCGGGGC-GGCGGCCu-- -3'
miRNA:   3'- aGGGGAAUa-------GCCCCGgUUGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 43488 0.69 0.724151
Target:  5'- cCCCCacgAUcgaCGGGGCCGugGCGGCC-CAu -3'
miRNA:   3'- aGGGGaa-UA---GCCCCGGU--UGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 46429 0.69 0.762747
Target:  5'- gCgCCgcgGUCGGGcGCCuGGCGGCCAUg -3'
miRNA:   3'- aGgGGaa-UAGCCC-CGG-UUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 48297 0.71 0.603087
Target:  5'- cCCCCgaagaggCGGGGCUGGCGGcuCCGCGc -3'
miRNA:   3'- aGGGGaaua---GCCCCGGUUGCU--GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 50090 0.72 0.56274
Target:  5'- gUCCC--GUCGGGGCCG-CGGCCGu- -3'
miRNA:   3'- aGGGGaaUAGCCCCGGUuGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 50501 0.68 0.820454
Target:  5'- gCCCCgcgGUCgugGGGGCCGagcacgaggcgcuggGCGAcaCCGCAg -3'
miRNA:   3'- aGGGGaa-UAG---CCCCGGU---------------UGCU--GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 51775 0.74 0.445805
Target:  5'- aCCCCguucaagagCGGGGCCGugGCGGCCAa- -3'
miRNA:   3'- aGGGGaaua-----GCCCCGGU--UGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 54500 0.72 0.542827
Target:  5'- gUCCCUggGUgGGGGCUggUGACUGCc -3'
miRNA:   3'- -AGGGGaaUAgCCCCGGuuGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 60581 0.66 0.889519
Target:  5'- cCCCCUggAUCcccgggacguuaccgGGGGCCAcccCGGCCcCAg -3'
miRNA:   3'- aGGGGAa-UAG---------------CCCCGGUu--GCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 61784 0.66 0.898082
Target:  5'- gUCCaCCUUGgcgCGGauGGCCGGgugguugaugguacCGGCCACGu -3'
miRNA:   3'- -AGG-GGAAUa--GCC--CCGGUU--------------GCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 65465 0.68 0.799509
Target:  5'- cCCCCggGUCcuggGGGcGCCcGCGcACCACGu -3'
miRNA:   3'- aGGGGaaUAG----CCC-CGGuUGC-UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 65660 0.66 0.900004
Target:  5'- cCCCCUggGUggcugcgcUGGGGCCGcCGGCCu-- -3'
miRNA:   3'- aGGGGAa-UA--------GCCCCGGUuGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 68335 0.66 0.890861
Target:  5'- gCCCCggcagacgcgCGGGacuGCUGGCGGCCGCu -3'
miRNA:   3'- aGGGGaaua------GCCC---CGGUUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 69983 0.67 0.84204
Target:  5'- -gCCCUggugGUCGGGgacgcGCUGAgGGCCACGu -3'
miRNA:   3'- agGGGAa---UAGCCC-----CGGUUgCUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.