miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 6344 0.68 0.808347
Target:  5'- aCCCCg----GGGGCCucCGACgACAg -3'
miRNA:   3'- aGGGGaauagCCCCGGuuGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 65465 0.68 0.799509
Target:  5'- cCCCCggGUCcuggGGGcGCCcGCGcACCACGu -3'
miRNA:   3'- aGGGGaaUAG----CCC-CGGuUGC-UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 30280 0.68 0.790522
Target:  5'- gCCCCggccccCGGGGCgGAgcCGGCCGCc -3'
miRNA:   3'- aGGGGaaua--GCCCCGgUU--GCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 86378 0.68 0.790522
Target:  5'- aCUCCUccgCGGGGCgcucggcuaacgCGGCGGCCGCu -3'
miRNA:   3'- aGGGGAauaGCCCCG------------GUUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 85273 0.68 0.790522
Target:  5'- cCUCCUUgGUCGuguuGGCCGACcGCCACAa -3'
miRNA:   3'- aGGGGAA-UAGCc---CCGGUUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 78638 0.68 0.790522
Target:  5'- cCCCCg---CGGcgcgcguuacGGCCAugGACCugGu -3'
miRNA:   3'- aGGGGaauaGCC----------CCGGUugCUGGugU- -5'
5985 3' -56.6 NC_001806.1 + 106355 0.68 0.781393
Target:  5'- cCCCCgaccgccgGUUGGGGCC--CGGCgGCAc -3'
miRNA:   3'- aGGGGaa------UAGCCCCGGuuGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 96472 0.68 0.772132
Target:  5'- cCCCCggcacgccUGGGGUCG-CGGCCGCGa -3'
miRNA:   3'- aGGGGaaua----GCCCCGGUuGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 72543 0.68 0.772132
Target:  5'- cCCCCgggaggggGUagGGGGCCcGgGGCCACAc -3'
miRNA:   3'- aGGGGaa------UAg-CCCCGGuUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 134962 0.68 0.772132
Target:  5'- aCCCCUcAUCGucGGCCGucgcgGCGGCCAUc -3'
miRNA:   3'- aGGGGAaUAGCc-CCGGU-----UGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 86122 0.68 0.772132
Target:  5'- aCCUCgcggGUCuGGGCC-ACGAUCACGu -3'
miRNA:   3'- aGGGGaa--UAGcCCCGGuUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 4178 0.68 0.772132
Target:  5'- gCCCCgggggCGGGGgcCCGGCGccggGCCACGg -3'
miRNA:   3'- aGGGGaaua-GCCCC--GGUUGC----UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 15005 0.68 0.768392
Target:  5'- gUCCCUUUgaggugaGUCGGGucguggggcgaguuGCCAGCGGCC-CGa -3'
miRNA:   3'- -AGGGGAA-------UAGCCC--------------CGGUUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 46429 0.69 0.762747
Target:  5'- gCgCCgcgGUCGGGcGCCuGGCGGCCAUg -3'
miRNA:   3'- aGgGGaa-UAGCCC-CGG-UUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 23788 0.69 0.762747
Target:  5'- aCCCCca--CGGGGCCGccgGgGGCCGCc -3'
miRNA:   3'- aGGGGaauaGCCCCGGU---UgCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 3763 0.69 0.761802
Target:  5'- gCCCUUcugcgcgcggucgUAUCGGcGGCUcAUGGCCACGg -3'
miRNA:   3'- aGGGGA-------------AUAGCC-CCGGuUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 2720 0.69 0.75706
Target:  5'- gCCCaggggGUCGGGGCCcucGgcgggccggcgcgacACGGCCACGg -3'
miRNA:   3'- aGGGgaa--UAGCCCCGG---U---------------UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 147231 0.69 0.753247
Target:  5'- cCCCCgcggggGUCGGGGCCGAgGAg---- -3'
miRNA:   3'- aGGGGaa----UAGCCCCGGUUgCUggugu -5'
5985 3' -56.6 NC_001806.1 + 133604 0.69 0.753247
Target:  5'- cCCCCU--UUGaGGCCAGCGACCc-- -3'
miRNA:   3'- aGGGGAauAGCcCCGGUUGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 90265 0.69 0.743642
Target:  5'- gCCCCUgGUCGuGGGCC--UGACCGu- -3'
miRNA:   3'- aGGGGAaUAGC-CCCGGuuGCUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.