miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 114358 0.67 0.85001
Target:  5'- -gCCCgacgCGGGcGCCAAC-ACCGCGu -3'
miRNA:   3'- agGGGaauaGCCC-CGGUUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 121662 0.67 0.85001
Target:  5'- gCCCCgUGUCuGuGGGCCAagAUGGCC-CAg -3'
miRNA:   3'- aGGGGaAUAG-C-CCCGGU--UGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 18086 0.67 0.84204
Target:  5'- aCCCac-AUCGccGGGCCGugGuCCGCAa -3'
miRNA:   3'- aGGGgaaUAGC--CCCGGUugCuGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 23537 0.67 0.84204
Target:  5'- cCCCCUg---GGcGGCUGGCGGCgGCAg -3'
miRNA:   3'- aGGGGAauagCC-CCGGUUGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 35684 0.67 0.84204
Target:  5'- aCCUCUUGUCGGGccucCCGACGuacGCCGa- -3'
miRNA:   3'- aGGGGAAUAGCCCc---GGUUGC---UGGUgu -5'
5985 3' -56.6 NC_001806.1 + 69983 0.67 0.84204
Target:  5'- -gCCCUggugGUCGGGgacgcGCUGAgGGCCACGu -3'
miRNA:   3'- agGGGAa---UAGCCC-----CGGUUgCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 70097 0.67 0.84204
Target:  5'- cUCCCCacgGUUGaGGGCCAuCGcACCAa- -3'
miRNA:   3'- -AGGGGaa-UAGC-CCCGGUuGC-UGGUgu -5'
5985 3' -56.6 NC_001806.1 + 72492 0.67 0.84204
Target:  5'- cCCCCUg--CGGGGCga--GAUCGCGg -3'
miRNA:   3'- aGGGGAauaGCCCCGguugCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 39171 0.67 0.833881
Target:  5'- gCCCCUUGgaucgcccCGGGGC-GGCGGCCu-- -3'
miRNA:   3'- aGGGGAAUa-------GCCCCGgUUGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 27785 0.67 0.833881
Target:  5'- cCCCCaaAUCgGGGGCCGGgcCGugCAUg -3'
miRNA:   3'- aGGGGaaUAG-CCCCGGUU--GCugGUGu -5'
5985 3' -56.6 NC_001806.1 + 22716 0.67 0.833881
Target:  5'- cUCCCCcgcg-GGGGgCGACGACCcCGa -3'
miRNA:   3'- -AGGGGaauagCCCCgGUUGCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 147707 0.67 0.826384
Target:  5'- gCCCCggagGcggcgcucgcacgcaCGGGGCC-ACGGCCGCGc -3'
miRNA:   3'- aGGGGaa--Ua--------------GCCCCGGuUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 147976 0.67 0.825541
Target:  5'- cCCCCgga--GGGGCCAgacgccccccGCGgcGCCGCGg -3'
miRNA:   3'- aGGGGaauagCCCCGGU----------UGC--UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 85740 0.67 0.825541
Target:  5'- aCCCUgcgGUCcGGaGCCGcGCGGCCACGu -3'
miRNA:   3'- aGGGGaa-UAGcCC-CGGU-UGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 75990 0.67 0.825541
Target:  5'- --gCCU--UCGGGGCCG-CGGCCgACAc -3'
miRNA:   3'- aggGGAauAGCCCCGGUuGCUGG-UGU- -5'
5985 3' -56.6 NC_001806.1 + 50501 0.68 0.820454
Target:  5'- gCCCCgcgGUCgugGGGGCCGagcacgaggcgcuggGCGAcaCCGCAg -3'
miRNA:   3'- aGGGGaa-UAG---CCCCGGU---------------UGCU--GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 22072 0.68 0.817028
Target:  5'- cCCCCgccccCGGGGCgggugcuguaCGGCGGCCugGg -3'
miRNA:   3'- aGGGGaaua-GCCCCG----------GUUGCUGGugU- -5'
5985 3' -56.6 NC_001806.1 + 84058 0.68 0.815305
Target:  5'- cCCCCgccgucugggaGUCGGGGCCccagcuGCGcgcuGCCGCGg -3'
miRNA:   3'- aGGGGaa---------UAGCCCCGGu-----UGC----UGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 125884 0.68 0.808347
Target:  5'- gCCCCUca-UGGGGUUuuacgaGGCGGCCACGc -3'
miRNA:   3'- aGGGGAauaGCCCCGG------UUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 6344 0.68 0.808347
Target:  5'- aCCCCg----GGGGCCucCGACgACAg -3'
miRNA:   3'- aGGGGaauagCCCCGGuuGCUGgUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.