miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 1536 0.7 0.542253
Target:  5'- aAAGUCCCUCcgCGGCCcgcgccaccgGGCCGGGCc -3'
miRNA:   3'- gUUCGGGGGGa-GCUGGua--------CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 2303 0.71 0.512097
Target:  5'- -cGGCCCCCC-CGaggccccGCCGccGGCCAGGUc -3'
miRNA:   3'- guUCGGGGGGaGC-------UGGUa-CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 2402 0.66 0.806178
Target:  5'- cCAGGCCgCCaugCGGCgCAgcgGGCCcgAGGCg -3'
miRNA:   3'- -GUUCGGgGGga-GCUG-GUa--CCGG--UUCG- -5'
5986 3' -58.6 NC_001806.1 + 2651 0.67 0.757915
Target:  5'- gUAGGCCUCCagggcggCGGCCGcgggcgccgccgugUGGCUggGCc -3'
miRNA:   3'- -GUUCGGGGGga-----GCUGGU--------------ACCGGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 2926 0.72 0.47519
Target:  5'- gCGGGCCgCCgCCUccgggCGGCCG-GGCCGGGCc -3'
miRNA:   3'- -GUUCGG-GG-GGA-----GCUGGUaCCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 3147 0.67 0.72234
Target:  5'- cCAGGgCCCCggCGACCA-GGCUcacGGCg -3'
miRNA:   3'- -GUUCgGGGGgaGCUGGUaCCGGu--UCG- -5'
5986 3' -58.6 NC_001806.1 + 3332 0.71 0.518849
Target:  5'- gCGGGUCCCUC-CGGCCGcggggggcuggcgGGCCGGGCc -3'
miRNA:   3'- -GUUCGGGGGGaGCUGGUa------------CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 3760 0.67 0.738841
Target:  5'- gAAGCCCUUCugcgcgcggucguaUCGGCggcuCAUGGCCAcGGCg -3'
miRNA:   3'- gUUCGGGGGG--------------AGCUG----GUACCGGU-UCG- -5'
5986 3' -58.6 NC_001806.1 + 3819 0.69 0.601064
Target:  5'- cCAGGCCCCagCCgaagCGgccggccGCCAUGGCguAGCc -3'
miRNA:   3'- -GUUCGGGG--GGa---GC-------UGGUACCGguUCG- -5'
5986 3' -58.6 NC_001806.1 + 4128 0.68 0.652564
Target:  5'- --cGCCCCCCagaGGCCcgGGCggcugucgccCAGGCc -3'
miRNA:   3'- guuCGGGGGGag-CUGGuaCCG----------GUUCG- -5'
5986 3' -58.6 NC_001806.1 + 4723 0.74 0.339919
Target:  5'- gGGGCCUCCCguucgCGGCCccgGGCCGGGg -3'
miRNA:   3'- gUUCGGGGGGa----GCUGGua-CCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 4960 0.67 0.732076
Target:  5'- gGGGCCCUCC-CGuCCc--GCCGGGCg -3'
miRNA:   3'- gUUCGGGGGGaGCuGGuacCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 5058 0.66 0.796475
Target:  5'- aGGGCCCCCCgcucgucgcggucUgGGCUcgGGgUggGCg -3'
miRNA:   3'- gUUCGGGGGG-------------AgCUGGuaCCgGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 5819 0.67 0.72234
Target:  5'- aCGAGCCCCgCgCGcCCGUuGGCCGuccccgGGCc -3'
miRNA:   3'- -GUUCGGGGgGaGCuGGUA-CCGGU------UCG- -5'
5986 3' -58.6 NC_001806.1 + 5922 0.66 0.803549
Target:  5'- --cGCCCCCCcaUUGGCCGgcgGGCgGgaccgccccaagggGGCg -3'
miRNA:   3'- guuCGGGGGG--AGCUGGUa--CCGgU--------------UCG- -5'
5986 3' -58.6 NC_001806.1 + 7010 0.71 0.522722
Target:  5'- uGAGCCagacccaaCCCC-CGGCCccaguugGGCCGGGCg -3'
miRNA:   3'- gUUCGG--------GGGGaGCUGGua-----CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 7726 0.7 0.552109
Target:  5'- cCGGGCCUUCuUUCGaACCGUGGUCGAGg -3'
miRNA:   3'- -GUUCGGGGG-GAGC-UGGUACCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 9094 0.78 0.202058
Target:  5'- gAAGCCCCCCggagccaccgagCGGCCA--GCCAGGCg -3'
miRNA:   3'- gUUCGGGGGGa-----------GCUGGUacCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 11367 0.69 0.642466
Target:  5'- gCGGGCUCCgacuCUUCGGCgAUGGCCGucagggagGGCa -3'
miRNA:   3'- -GUUCGGGG----GGAGCUGgUACCGGU--------UCG- -5'
5986 3' -58.6 NC_001806.1 + 11952 0.71 0.500608
Target:  5'- aGAGUCCCUUcggCGGCUAUGGCCAccccaggacaaacaGGCu -3'
miRNA:   3'- gUUCGGGGGGa--GCUGGUACCGGU--------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.