miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 30140 0.81 0.122793
Target:  5'- aCAGGCCCCCCgcggCGcCCAU-GCCAGGCu -3'
miRNA:   3'- -GUUCGGGGGGa---GCuGGUAcCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 23616 0.81 0.125989
Target:  5'- --uGCUCCCCgCGcGCCGUGGCCGAGCu -3'
miRNA:   3'- guuCGGGGGGaGC-UGGUACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 85300 0.79 0.170767
Target:  5'- aCAAcGCCCCCCUCcagGACCucuUGGCCGGGa -3'
miRNA:   3'- -GUU-CGGGGGGAG---CUGGu--ACCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 88299 0.79 0.170767
Target:  5'- uCAuGCCCCCCUCGA---UGGCCAGGUu -3'
miRNA:   3'- -GUuCGGGGGGAGCUgguACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 75299 0.79 0.17508
Target:  5'- -uGGCCUUCCUagCGGCCAUGGCCGacAGCg -3'
miRNA:   3'- guUCGGGGGGA--GCUGGUACCGGU--UCG- -5'
5986 3' -58.6 NC_001806.1 + 136384 0.79 0.17508
Target:  5'- -cGGCCUCCg-CGACCGUGGCCAgcuGGCg -3'
miRNA:   3'- guUCGGGGGgaGCUGGUACCGGU---UCG- -5'
5986 3' -58.6 NC_001806.1 + 29867 0.79 0.184
Target:  5'- aCAGcGCCCCCCUCGGcgcCCAUcgGGCCAcacGGCa -3'
miRNA:   3'- -GUU-CGGGGGGAGCU---GGUA--CCGGU---UCG- -5'
5986 3' -58.6 NC_001806.1 + 9094 0.78 0.202058
Target:  5'- gAAGCCCCCCggagccaccgagCGGCCA--GCCAGGCg -3'
miRNA:   3'- gUUCGGGGGGa-----------GCUGGUacCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 76646 0.78 0.213201
Target:  5'- --cGCCgUCCCggCGACCGUGGCCAAGa -3'
miRNA:   3'- guuCGG-GGGGa-GCUGGUACCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 30218 0.77 0.218439
Target:  5'- --cGCgCCCCCgcgCGGCCGUGGCCccgugcgugcGAGCg -3'
miRNA:   3'- guuCG-GGGGGa--GCUGGUACCGG----------UUCG- -5'
5986 3' -58.6 NC_001806.1 + 52774 0.77 0.218439
Target:  5'- cCGAGCCCCCCgcugCGGCCAcacagccGGCCAcGUa -3'
miRNA:   3'- -GUUCGGGGGGa---GCUGGUa------CCGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 144601 0.77 0.240498
Target:  5'- cCGGGCCCCCCUgCaGCCGgggcGGCCAAGg -3'
miRNA:   3'- -GUUCGGGGGGA-GcUGGUa---CCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 102497 0.76 0.258238
Target:  5'- -cGGCCgCCCUCGgucccgaucACCGcGGCCAGGCa -3'
miRNA:   3'- guUCGGgGGGAGC---------UGGUaCCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 106351 0.76 0.283537
Target:  5'- --cGCCCCCC-CGACCGccgguuggGGCCcGGCg -3'
miRNA:   3'- guuCGGGGGGaGCUGGUa-------CCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 125296 0.75 0.30377
Target:  5'- cUAAGCgUCCCUgGGCCcUGGCCGAGg -3'
miRNA:   3'- -GUUCGgGGGGAgCUGGuACCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 73099 0.75 0.317864
Target:  5'- -cGGCaCCCCC-CGACCc-GGCCGGGCc -3'
miRNA:   3'- guUCG-GGGGGaGCUGGuaCCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 64857 0.75 0.325094
Target:  5'- aAAGCCCCuCCgcgCGuCCcgGGCCAcGGCg -3'
miRNA:   3'- gUUCGGGG-GGa--GCuGGuaCCGGU-UCG- -5'
5986 3' -58.6 NC_001806.1 + 82126 0.74 0.332446
Target:  5'- cCGAGCCgCCCCUUGAUgGUGuCCAGGUc -3'
miRNA:   3'- -GUUCGG-GGGGAGCUGgUACcGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 4723 0.74 0.339919
Target:  5'- gGGGCCUCCCguucgCGGCCccgGGCCGGGg -3'
miRNA:   3'- gUUCGGGGGGa----GCUGGua-CCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 52559 0.74 0.339919
Target:  5'- gGGGCCUCCCcCGGacgaCAUGGCCAgcGGCc -3'
miRNA:   3'- gUUCGGGGGGaGCUg---GUACCGGU--UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.