miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 30580 0.74 0.347512
Target:  5'- ---cCCCCCCUCGcGCCGgcaggGGCCAAGa -3'
miRNA:   3'- guucGGGGGGAGC-UGGUa----CCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 43484 0.73 0.387273
Target:  5'- gAGGCCCCCacgaUCGACgG-GGCCGuGGCg -3'
miRNA:   3'- gUUCGGGGGg---AGCUGgUaCCGGU-UCG- -5'
5986 3' -58.6 NC_001806.1 + 30182 0.73 0.403994
Target:  5'- cCGGGCCCCCCgCGuCCGcGGCCGcGUc -3'
miRNA:   3'- -GUUCGGGGGGaGCuGGUaCCGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 119602 0.73 0.403994
Target:  5'- gGAGCCCCCCggcgggGGCCGcuuugUGGCCccAGCg -3'
miRNA:   3'- gUUCGGGGGGag----CUGGU-----ACCGGu-UCG- -5'
5986 3' -58.6 NC_001806.1 + 150636 0.73 0.403994
Target:  5'- cCGGGCCCCgaagaCUCGGCgGacgcugguUGGCCGGGCc -3'
miRNA:   3'- -GUUCGGGGg----GAGCUGgU--------ACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 23483 0.73 0.412524
Target:  5'- gCAGGCCCgCCCgCGccCCGUGGCCGugucGCg -3'
miRNA:   3'- -GUUCGGG-GGGaGCu-GGUACCGGUu---CG- -5'
5986 3' -58.6 NC_001806.1 + 17474 0.72 0.438768
Target:  5'- -cGGCCaaCCUUCGACgGuUGGCCGAGCc -3'
miRNA:   3'- guUCGGg-GGGAGCUGgU-ACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 37585 0.72 0.447726
Target:  5'- aGGGCCCUCCUUGGCCc--GCCA-GCa -3'
miRNA:   3'- gUUCGGGGGGAGCUGGuacCGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 88475 0.72 0.447726
Target:  5'- uCGAcCCCaCCCUCGuACUucuugAUGGCCGGGCa -3'
miRNA:   3'- -GUUcGGG-GGGAGC-UGG-----UACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 79869 0.72 0.447726
Target:  5'- uCGGGCCCCa---GGCCGccGGCCAGGCu -3'
miRNA:   3'- -GUUCGGGGggagCUGGUa-CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 46181 0.72 0.457695
Target:  5'- cCGGGCCCCCCgaacccagcggguggCGACUAaGGCCcccGCg -3'
miRNA:   3'- -GUUCGGGGGGa--------------GCUGGUaCCGGuu-CG- -5'
5986 3' -58.6 NC_001806.1 + 23696 0.72 0.47519
Target:  5'- gCGGGCCCUggCCUCGAUCGccgcgcggUGcGCCGGGCc -3'
miRNA:   3'- -GUUCGGGG--GGAGCUGGU--------AC-CGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 2926 0.72 0.47519
Target:  5'- gCGGGCCgCCgCCUccgggCGGCCG-GGCCGGGCc -3'
miRNA:   3'- -GUUCGG-GG-GGA-----GCUGGUaCCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 22908 0.71 0.484531
Target:  5'- -cAGCCCCCCgCGGCCGgagGGaCCcgcGGGCc -3'
miRNA:   3'- guUCGGGGGGaGCUGGUa--CC-GG---UUCG- -5'
5986 3' -58.6 NC_001806.1 + 49142 0.71 0.484531
Target:  5'- --cGCCCCcgcgCCUCGcCCGUGGCggaCGAGCc -3'
miRNA:   3'- guuCGGGG----GGAGCuGGUACCG---GUUCG- -5'
5986 3' -58.6 NC_001806.1 + 84204 0.71 0.493959
Target:  5'- -cAGCCCgaCCUCGACCugggcccucugAUGGCCAccguGCu -3'
miRNA:   3'- guUCGGGg-GGAGCUGG-----------UACCGGUu---CG- -5'
5986 3' -58.6 NC_001806.1 + 48369 0.71 0.493959
Target:  5'- -cGGCCCCCC-CGACCGaugucagccUGGgggaCGAGCu -3'
miRNA:   3'- guUCGGGGGGaGCUGGU---------ACCg---GUUCG- -5'
5986 3' -58.6 NC_001806.1 + 11952 0.71 0.500608
Target:  5'- aGAGUCCCUUcggCGGCUAUGGCCAccccaggacaaacaGGCu -3'
miRNA:   3'- gUUCGGGGGGa--GCUGGUACCGGU--------------UCG- -5'
5986 3' -58.6 NC_001806.1 + 96351 0.71 0.503469
Target:  5'- aCGGGCCCCCgUagucccGCCAUGcGCCAGGg -3'
miRNA:   3'- -GUUCGGGGGgAgc----UGGUAC-CGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 23413 0.71 0.503469
Target:  5'- --cGCCCCCCUCcacGCCcccggGGcCCGAGCc -3'
miRNA:   3'- guuCGGGGGGAGc--UGGua---CC-GGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.