miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 116442 0.66 0.797364
Target:  5'- --cGUCCCgCC-CGugUucgagGGCCAAGCg -3'
miRNA:   3'- guuCGGGG-GGaGCugGua---CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 129075 0.66 0.797364
Target:  5'- gCGAGCgCCCCgaCGGCCAggugcgugacugUGGuCCGcGCg -3'
miRNA:   3'- -GUUCG-GGGGgaGCUGGU------------ACC-GGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 132723 0.66 0.797364
Target:  5'- ---uCCCCCCgCGAgC-UGGCCcGGCg -3'
miRNA:   3'- guucGGGGGGaGCUgGuACCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 136706 0.66 0.797364
Target:  5'- gCGGGCCgCCa-----CGUGGCCGAGCa -3'
miRNA:   3'- -GUUCGGgGGgagcugGUACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 129863 0.66 0.797364
Target:  5'- ---aCCCCCCUCggggacguGACCAcguggGGCCAAuaccGCg -3'
miRNA:   3'- guucGGGGGGAG--------CUGGUa----CCGGUU----CG- -5'
5986 3' -58.6 NC_001806.1 + 5058 0.66 0.796475
Target:  5'- aGGGCCCCCCgcucgucgcggucUgGGCUcgGGgUggGCg -3'
miRNA:   3'- gUUCGGGGGG-------------AgCUGGuaCCgGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 55873 0.66 0.788406
Target:  5'- aAGGCCCaCC-CGcCCcgGGCCAuGCc -3'
miRNA:   3'- gUUCGGGgGGaGCuGGuaCCGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 90261 0.66 0.788406
Target:  5'- -uGGCgCCCCUggucgugggccUGACCGUGGa-GAGCg -3'
miRNA:   3'- guUCGgGGGGA-----------GCUGGUACCggUUCG- -5'
5986 3' -58.6 NC_001806.1 + 114574 0.66 0.788406
Target:  5'- gCAGGUCCCCCUgGuccCCccGGCUcuggGGGCc -3'
miRNA:   3'- -GUUCGGGGGGAgCu--GGuaCCGG----UUCG- -5'
5986 3' -58.6 NC_001806.1 + 130640 0.66 0.788406
Target:  5'- gAGGCCUgUCUCcgcguucCCAUGGCCAcccgcAGCa -3'
miRNA:   3'- gUUCGGGgGGAGcu-----GGUACCGGU-----UCG- -5'
5986 3' -58.6 NC_001806.1 + 51606 0.66 0.788406
Target:  5'- gGAGCUgCCCggCGGCCAguUGaGCCGcGCc -3'
miRNA:   3'- gUUCGGgGGGa-GCUGGU--AC-CGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 85075 0.66 0.788406
Target:  5'- --cGCUgCCCUUcugucuggaccaGACCGUGGCCGAc- -3'
miRNA:   3'- guuCGGgGGGAG------------CUGGUACCGGUUcg -5'
5986 3' -58.6 NC_001806.1 + 118914 0.66 0.788406
Target:  5'- -uGGCCCCCgUCGuGCCGgcacacccUGGCCuccuuccGCg -3'
miRNA:   3'- guUCGGGGGgAGC-UGGU--------ACCGGuu-----CG- -5'
5986 3' -58.6 NC_001806.1 + 83778 0.66 0.788406
Target:  5'- cCGGGCCCUCaUCGgaACCuUGGCCuccggGGGCg -3'
miRNA:   3'- -GUUCGGGGGgAGC--UGGuACCGG-----UUCG- -5'
5986 3' -58.6 NC_001806.1 + 30482 0.66 0.77931
Target:  5'- --cGCUCCCCUCcGCCGccucuGUCGAGCa -3'
miRNA:   3'- guuCGGGGGGAGcUGGUac---CGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 49328 0.66 0.77931
Target:  5'- gAAGCCCCgCCcacaucCCAUcGCCGAGCg -3'
miRNA:   3'- gUUCGGGG-GGagcu--GGUAcCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 131502 0.66 0.77931
Target:  5'- cCAAGUuggCCCCCg-GACCcgGGCCGu-- -3'
miRNA:   3'- -GUUCG---GGGGGagCUGGuaCCGGUucg -5'
5986 3' -58.6 NC_001806.1 + 106484 0.66 0.77931
Target:  5'- ---cUCCCCgUCGGCCucgacGUGGCCcguGGGCa -3'
miRNA:   3'- guucGGGGGgAGCUGG-----UACCGG---UUCG- -5'
5986 3' -58.6 NC_001806.1 + 98009 0.66 0.770085
Target:  5'- cCAAcGCCaUCgCCUCGGCCAccgugGGCC-GGCg -3'
miRNA:   3'- -GUU-CGG-GG-GGAGCUGGUa----CCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 97808 0.66 0.770085
Target:  5'- --cGCCCCCgC-CGcCCggGGCCA-GCg -3'
miRNA:   3'- guuCGGGGG-GaGCuGGuaCCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.