miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 97808 0.66 0.770085
Target:  5'- --cGCCCCCgC-CGcCCggGGCCA-GCg -3'
miRNA:   3'- guuCGGGGG-GaGCuGGuaCCGGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 98009 0.66 0.770085
Target:  5'- cCAAcGCCaUCgCCUCGGCCAccgugGGCC-GGCg -3'
miRNA:   3'- -GUU-CGG-GG-GGAGCUGGUa----CCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 74193 0.66 0.770085
Target:  5'- -cGGCCgCCgUCGugcCCGUGGUCcAGCu -3'
miRNA:   3'- guUCGGgGGgAGCu--GGUACCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 30332 0.67 0.760741
Target:  5'- --uGCCCCagucgcaCUCGuCCcUGGCuCAGGCc -3'
miRNA:   3'- guuCGGGGg------GAGCuGGuACCG-GUUCG- -5'
5986 3' -58.6 NC_001806.1 + 144139 0.67 0.760741
Target:  5'- -cGGCCCCCCgCGAguCCAcccgccGGCC-GGCu -3'
miRNA:   3'- guUCGGGGGGaGCU--GGUa-----CCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 24067 0.67 0.760741
Target:  5'- --cGCCCCCgaCGugUcgGcGCUggGCg -3'
miRNA:   3'- guuCGGGGGgaGCugGuaC-CGGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 47194 0.67 0.760741
Target:  5'- --cGCCCCCC-CGcCC--GGCCGGGg -3'
miRNA:   3'- guuCGGGGGGaGCuGGuaCCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 78922 0.67 0.760741
Target:  5'- cCGAGCggCCCCUCGcCCggGGCCc-GCc -3'
miRNA:   3'- -GUUCGg-GGGGAGCuGGuaCCGGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 121841 0.67 0.760741
Target:  5'- ---aUCCCCC-CGACCAgcGCCGGGUg -3'
miRNA:   3'- guucGGGGGGaGCUGGUacCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 147100 0.67 0.757915
Target:  5'- -cGGCCCCCg-CGGCCcagaagcagcgcgggGGCCGAGg -3'
miRNA:   3'- guUCGGGGGgaGCUGGua-------------CCGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 2651 0.67 0.757915
Target:  5'- gUAGGCCUCCagggcggCGGCCGcgggcgccgccgugUGGCUggGCc -3'
miRNA:   3'- -GUUCGGGGGga-----GCUGGU--------------ACCGGuuCG- -5'
5986 3' -58.6 NC_001806.1 + 31877 0.67 0.751285
Target:  5'- --uGCCCgCCCggacUGACC-UGGCCucuGGCc -3'
miRNA:   3'- guuCGGG-GGGa---GCUGGuACCGGu--UCG- -5'
5986 3' -58.6 NC_001806.1 + 29150 0.67 0.751285
Target:  5'- gGAGCCCCCCccgcgaggaaGACCccGGCaguuGCg -3'
miRNA:   3'- gUUCGGGGGGag--------CUGGuaCCGguu-CG- -5'
5986 3' -58.6 NC_001806.1 + 23819 0.67 0.741727
Target:  5'- -uGGCCCCCUgcgCGcCUcgGGCCcgcuGCg -3'
miRNA:   3'- guUCGGGGGGa--GCuGGuaCCGGuu--CG- -5'
5986 3' -58.6 NC_001806.1 + 29841 0.67 0.741727
Target:  5'- -cAGCCCCCCagcCGGCCGcGGCUcGGn -3'
miRNA:   3'- guUCGGGGGGa--GCUGGUaCCGGuUCg -5'
5986 3' -58.6 NC_001806.1 + 57099 0.67 0.741727
Target:  5'- aGGGCCgCUCCacCGGCCGccaguuUGaGCCAGGCg -3'
miRNA:   3'- gUUCGG-GGGGa-GCUGGU------AC-CGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 3760 0.67 0.738841
Target:  5'- gAAGCCCUUCugcgcgcggucguaUCGGCggcuCAUGGCCAcGGCg -3'
miRNA:   3'- gUUCGGGGGG--------------AGCUG----GUACCGGU-UCG- -5'
5986 3' -58.6 NC_001806.1 + 37644 0.67 0.737878
Target:  5'- --uGCCCCCCaaaggggUCGugCAUgaccugugcgcugcGGCCAaAGCu -3'
miRNA:   3'- guuCGGGGGG-------AGCugGUA--------------CCGGU-UCG- -5'
5986 3' -58.6 NC_001806.1 + 21098 0.67 0.732076
Target:  5'- --cGCCCCgCaUCGGCgAUGGCgucggagaaCAAGCa -3'
miRNA:   3'- guuCGGGGgG-AGCUGgUACCG---------GUUCG- -5'
5986 3' -58.6 NC_001806.1 + 127669 0.67 0.732076
Target:  5'- -cGGCUCCCCgUCGGaaucuCCGUaccGGUCGAGCu -3'
miRNA:   3'- guUCGGGGGG-AGCU-----GGUA---CCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.