miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 5' -53.9 NC_001806.1 + 112431 0.79 0.354411
Target:  5'- cGGGCggc-CGGUCgACGGGGUGCUCGu -3'
miRNA:   3'- -CCCGaaauGCUAGgUGCCUCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 151448 0.75 0.536198
Target:  5'- gGGGCggcgGCGGggcggCCGCGGGcGCGCUCc -3'
miRNA:   3'- -CCCGaaa-UGCUa----GGUGCCU-CGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 34315 0.74 0.60765
Target:  5'- gGGGCg--GCGcgCCggACGGGGCGCUgGa -3'
miRNA:   3'- -CCCGaaaUGCuaGG--UGCCUCGCGAgU- -5'
5986 5' -53.9 NC_001806.1 + 11320 0.74 0.638694
Target:  5'- uGGGUgucgUGgGGUCCACGGGGgGCgUCGg -3'
miRNA:   3'- -CCCGaa--AUgCUAGGUGCCUCgCG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 2743 0.73 0.649042
Target:  5'- cGGGCcggcGCGAcacggCCACGGGGCGCgggCGg -3'
miRNA:   3'- -CCCGaaa-UGCUa----GGUGCCUCGCGa--GU- -5'
5986 5' -53.9 NC_001806.1 + 86357 0.72 0.710533
Target:  5'- cGGGCaggggucGCGccagccacuccUCCGCGGGGCGCUCGg -3'
miRNA:   3'- -CCCGaaa----UGCu----------AGGUGCCUCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 43586 0.72 0.740483
Target:  5'- gGGGCggcugACaaGUCCGCGGAuGUGCUCGu -3'
miRNA:   3'- -CCCGaaa--UGc-UAGGUGCCU-CGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 137661 0.71 0.787413
Target:  5'- aGGGCgcccugacGCGGUuggccccggccacCCACGGGGCGCUg- -3'
miRNA:   3'- -CCCGaaa-----UGCUA-------------GGUGCCUCGCGAgu -5'
5986 5' -53.9 NC_001806.1 + 147639 0.71 0.788338
Target:  5'- gGGGCacacgGCGcgcGUCCGCGGGGCGggCGg -3'
miRNA:   3'- -CCCGaaa--UGC---UAGGUGCCUCGCgaGU- -5'
5986 5' -53.9 NC_001806.1 + 49498 0.71 0.788338
Target:  5'- gGGGCgggucgGCGGUUCGCGGguGGCGC-CGu -3'
miRNA:   3'- -CCCGaaa---UGCUAGGUGCC--UCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 15847 0.7 0.815401
Target:  5'- cGGGCcccUUUugGggCCGCGGGGgGC-CGa -3'
miRNA:   3'- -CCCG---AAAugCuaGGUGCCUCgCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 49101 0.7 0.815401
Target:  5'- cGGCUc-GCGAacCCGCGGGGCGCa-- -3'
miRNA:   3'- cCCGAaaUGCUa-GGUGCCUCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 25907 0.7 0.832605
Target:  5'- cGGGCg--GCGGUCCggGCGGcguGCGCg-- -3'
miRNA:   3'- -CCCGaaaUGCUAGG--UGCCu--CGCGagu -5'
5986 5' -53.9 NC_001806.1 + 35507 0.7 0.840931
Target:  5'- aGGGCgagGCG-UCggaGCGGGGCcGCUCAc -3'
miRNA:   3'- -CCCGaaaUGCuAGg--UGCCUCG-CGAGU- -5'
5986 5' -53.9 NC_001806.1 + 147692 0.69 0.849064
Target:  5'- gGGGCgcggggGCGggCCcCGGAggcgGCGCUCGc -3'
miRNA:   3'- -CCCGaaa---UGCuaGGuGCCU----CGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 150982 0.69 0.864717
Target:  5'- cGGGCcc-ACGAgCCGCGGcGCGC-CAg -3'
miRNA:   3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 2661 0.69 0.864717
Target:  5'- aGGGCg--GCGG-CCGCGG-GCGC-CGc -3'
miRNA:   3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 4829 0.69 0.872225
Target:  5'- gGGGCg--GCGAggCCGCGGGGUcggGCgUCGg -3'
miRNA:   3'- -CCCGaaaUGCUa-GGUGCCUCG---CG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 56867 0.69 0.879513
Target:  5'- cGGGCccacCGAUCCACcaGAGCGCg-- -3'
miRNA:   3'- -CCCGaaauGCUAGGUGc-CUCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 18455 0.69 0.886576
Target:  5'- uGGGCccggGCGuUCCACGGAGCugguaUCGg -3'
miRNA:   3'- -CCCGaaa-UGCuAGGUGCCUCGcg---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.