Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5986 | 5' | -53.9 | NC_001806.1 | + | 2661 | 0.69 | 0.864717 |
Target: 5'- aGGGCg--GCGG-CCGCGG-GCGC-CGc -3' miRNA: 3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 2743 | 0.73 | 0.649042 |
Target: 5'- cGGGCcggcGCGAcacggCCACGGGGCGCgggCGg -3' miRNA: 3'- -CCCGaaa-UGCUa----GGUGCCUCGCGa--GU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 4061 | 0.66 | 0.95664 |
Target: 5'- cGGGCgcccacACGG-CCGcCGGGGCGCcCGa -3' miRNA: 3'- -CCCGaaa---UGCUaGGU-GCCUCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 4829 | 0.69 | 0.872225 |
Target: 5'- gGGGCg--GCGAggCCGCGGGGUcggGCgUCGg -3' miRNA: 3'- -CCCGaaaUGCUa-GGUGCCUCG---CG-AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 11320 | 0.74 | 0.638694 |
Target: 5'- uGGGUgucgUGgGGUCCACGGGGgGCgUCGg -3' miRNA: 3'- -CCCGaa--AUgCUAGGUGCCUCgCG-AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 15072 | 0.66 | 0.960355 |
Target: 5'- cGGGCg--ACuGGUCU-CGGGGCGCg-- -3' miRNA: 3'- -CCCGaaaUG-CUAGGuGCCUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 15847 | 0.7 | 0.815401 |
Target: 5'- cGGGCcccUUUugGggCCGCGGGGgGC-CGa -3' miRNA: 3'- -CCCG---AAAugCuaGGUGCCUCgCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 18455 | 0.69 | 0.886576 |
Target: 5'- uGGGCccggGCGuUCCACGGAGCugguaUCGg -3' miRNA: 3'- -CCCGaaa-UGCuAGGUGCCUCGcg---AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 21866 | 0.66 | 0.962821 |
Target: 5'- cGGGCggcgGCGAggacccccgcggccUCCGCGGGcCGCaUCGa -3' miRNA: 3'- -CCCGaaa-UGCU--------------AGGUGCCUcGCG-AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 25006 | 0.68 | 0.900007 |
Target: 5'- cGGGCcgggACGGg--GCGGGGCGCUUg -3' miRNA: 3'- -CCCGaaa-UGCUaggUGCCUCGCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 25907 | 0.7 | 0.832605 |
Target: 5'- cGGGCg--GCGGUCCggGCGGcguGCGCg-- -3' miRNA: 3'- -CCCGaaaUGCUAGG--UGCCu--CGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 34315 | 0.74 | 0.60765 |
Target: 5'- gGGGCg--GCGcgCCggACGGGGCGCUgGa -3' miRNA: 3'- -CCCGaaaUGCuaGG--UGCCUCGCGAgU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 35507 | 0.7 | 0.840931 |
Target: 5'- aGGGCgagGCG-UCggaGCGGGGCcGCUCAc -3' miRNA: 3'- -CCCGaaaUGCuAGg--UGCCUCG-CGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 43223 | 0.66 | 0.95664 |
Target: 5'- gGGGCUaUAUGuggCUggGGAGCGCg-- -3' miRNA: 3'- -CCCGAaAUGCua-GGugCCUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 43586 | 0.72 | 0.740483 |
Target: 5'- gGGGCggcugACaaGUCCGCGGAuGUGCUCGu -3' miRNA: 3'- -CCCGaaa--UGc-UAGGUGCCU-CGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49101 | 0.7 | 0.815401 |
Target: 5'- cGGCUc-GCGAacCCGCGGGGCGCa-- -3' miRNA: 3'- cCCGAaaUGCUa-GGUGCCUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49498 | 0.71 | 0.788338 |
Target: 5'- gGGGCgggucgGCGGUUCGCGGguGGCGC-CGu -3' miRNA: 3'- -CCCGaaa---UGCUAGGUGCC--UCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 56867 | 0.69 | 0.879513 |
Target: 5'- cGGGCccacCGAUCCACcaGAGCGCg-- -3' miRNA: 3'- -CCCGaaauGCUAGGUGc-CUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 65462 | 0.66 | 0.95664 |
Target: 5'- cGGCccccgGGUCCugGGGGCGCcCGc -3' miRNA: 3'- cCCGaaaugCUAGGugCCUCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 83334 | 0.66 | 0.948083 |
Target: 5'- gGGGCUUUugGAcaccgggcccuuuUCCGCGGcGGCcaUCGa -3' miRNA: 3'- -CCCGAAAugCU-------------AGGUGCC-UCGcgAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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