miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 5' -53.9 NC_001806.1 + 86357 0.72 0.710533
Target:  5'- cGGGCaggggucGCGccagccacuccUCCGCGGGGCGCUCGg -3'
miRNA:   3'- -CCCGaaa----UGCu----------AGGUGCCUCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 94749 0.68 0.900007
Target:  5'- cGGGCUgucggACGccgaCCGCGcgcGGGCGCUCu -3'
miRNA:   3'- -CCCGAaa---UGCua--GGUGC---CUCGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 95552 0.67 0.924002
Target:  5'- gGGGCgcUGCG-UCCGCGaGcAGCGCg-- -3'
miRNA:   3'- -CCCGaaAUGCuAGGUGC-C-UCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 97822 0.68 0.91779
Target:  5'- gGGGCca-GCGccaacgcGUCCGUGGAGCGCaUCAa -3'
miRNA:   3'- -CCCGaaaUGC-------UAGGUGCCUCGCG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 112431 0.79 0.354411
Target:  5'- cGGGCggc-CGGUCgACGGGGUGCUCGu -3'
miRNA:   3'- -CCCGaaauGCUAGgUGCCUCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 112539 0.66 0.958153
Target:  5'- cGGCgagAUGGUCCugaACGGggccaaccuggucacGGCGCUCGu -3'
miRNA:   3'- cCCGaaaUGCUAGG---UGCC---------------UCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 130439 0.67 0.934536
Target:  5'- aGGGCccagcGCGAUCUACGGgAGCuGCg-- -3'
miRNA:   3'- -CCCGaaa--UGCUAGGUGCC-UCG-CGagu -5'
5986 5' -53.9 NC_001806.1 + 137661 0.71 0.787413
Target:  5'- aGGGCgcccugacGCGGUuggccccggccacCCACGGGGCGCUg- -3'
miRNA:   3'- -CCCGaaa-----UGCUA-------------GGUGCCUCGCGAgu -5'
5986 5' -53.9 NC_001806.1 + 140290 0.67 0.924002
Target:  5'- gGGGUccUAgGAUCCcggcCGGAucGCGCUCGu -3'
miRNA:   3'- -CCCGaaAUgCUAGGu---GCCU--CGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 143418 0.66 0.963845
Target:  5'- cGGCUcUUACGAgcggCC-CGGcccGCGCUCc -3'
miRNA:   3'- cCCGA-AAUGCUa---GGuGCCu--CGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 147639 0.71 0.788338
Target:  5'- gGGGCacacgGCGcgcGUCCGCGGGGCGggCGg -3'
miRNA:   3'- -CCCGaaa--UGC---UAGGUGCCUCGCgaGU- -5'
5986 5' -53.9 NC_001806.1 + 147692 0.69 0.849064
Target:  5'- gGGGCgcggggGCGggCCcCGGAggcgGCGCUCGc -3'
miRNA:   3'- -CCCGaaa---UGCuaGGuGCCU----CGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 150982 0.69 0.864717
Target:  5'- cGGGCcc-ACGAgCCGCGGcGCGC-CAg -3'
miRNA:   3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 151100 0.66 0.948514
Target:  5'- cGGGggUcGCGGgggUCGCGGGGgGCUCc -3'
miRNA:   3'- -CCCgaAaUGCUa--GGUGCCUCgCGAGu -5'
5986 5' -53.9 NC_001806.1 + 151448 0.75 0.536198
Target:  5'- gGGGCggcgGCGGggcggCCGCGGGcGCGCUCc -3'
miRNA:   3'- -CCCGaaa-UGCUa----GGUGCCU-CGCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.