Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5986 | 5' | -53.9 | NC_001806.1 | + | 151448 | 0.75 | 0.536198 |
Target: 5'- gGGGCggcgGCGGggcggCCGCGGGcGCGCUCc -3' miRNA: 3'- -CCCGaaa-UGCUa----GGUGCCU-CGCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 151100 | 0.66 | 0.948514 |
Target: 5'- cGGGggUcGCGGgggUCGCGGGGgGCUCc -3' miRNA: 3'- -CCCgaAaUGCUa--GGUGCCUCgCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 150982 | 0.69 | 0.864717 |
Target: 5'- cGGGCcc-ACGAgCCGCGGcGCGC-CAg -3' miRNA: 3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 147692 | 0.69 | 0.849064 |
Target: 5'- gGGGCgcggggGCGggCCcCGGAggcgGCGCUCGc -3' miRNA: 3'- -CCCGaaa---UGCuaGGuGCCU----CGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 147639 | 0.71 | 0.788338 |
Target: 5'- gGGGCacacgGCGcgcGUCCGCGGGGCGggCGg -3' miRNA: 3'- -CCCGaaa--UGC---UAGGUGCCUCGCgaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 143418 | 0.66 | 0.963845 |
Target: 5'- cGGCUcUUACGAgcggCC-CGGcccGCGCUCc -3' miRNA: 3'- cCCGA-AAUGCUa---GGuGCCu--CGCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 140290 | 0.67 | 0.924002 |
Target: 5'- gGGGUccUAgGAUCCcggcCGGAucGCGCUCGu -3' miRNA: 3'- -CCCGaaAUgCUAGGu---GCCU--CGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 137661 | 0.71 | 0.787413 |
Target: 5'- aGGGCgcccugacGCGGUuggccccggccacCCACGGGGCGCUg- -3' miRNA: 3'- -CCCGaaa-----UGCUA-------------GGUGCCUCGCGAgu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 130439 | 0.67 | 0.934536 |
Target: 5'- aGGGCccagcGCGAUCUACGGgAGCuGCg-- -3' miRNA: 3'- -CCCGaaa--UGCUAGGUGCC-UCG-CGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 112539 | 0.66 | 0.958153 |
Target: 5'- cGGCgagAUGGUCCugaACGGggccaaccuggucacGGCGCUCGu -3' miRNA: 3'- cCCGaaaUGCUAGG---UGCC---------------UCGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 112431 | 0.79 | 0.354411 |
Target: 5'- cGGGCggc-CGGUCgACGGGGUGCUCGu -3' miRNA: 3'- -CCCGaaauGCUAGgUGCCUCGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 97822 | 0.68 | 0.91779 |
Target: 5'- gGGGCca-GCGccaacgcGUCCGUGGAGCGCaUCAa -3' miRNA: 3'- -CCCGaaaUGC-------UAGGUGCCUCGCG-AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 95552 | 0.67 | 0.924002 |
Target: 5'- gGGGCgcUGCG-UCCGCGaGcAGCGCg-- -3' miRNA: 3'- -CCCGaaAUGCuAGGUGC-C-UCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 94749 | 0.68 | 0.900007 |
Target: 5'- cGGGCUgucggACGccgaCCGCGcgcGGGCGCUCu -3' miRNA: 3'- -CCCGAaa---UGCua--GGUGC---CUCGCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 86357 | 0.72 | 0.710533 |
Target: 5'- cGGGCaggggucGCGccagccacuccUCCGCGGGGCGCUCGg -3' miRNA: 3'- -CCCGaaa----UGCu----------AGGUGCCUCGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 83334 | 0.66 | 0.948083 |
Target: 5'- gGGGCUUUugGAcaccgggcccuuuUCCGCGGcGGCcaUCGa -3' miRNA: 3'- -CCCGAAAugCU-------------AGGUGCC-UCGcgAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 65462 | 0.66 | 0.95664 |
Target: 5'- cGGCccccgGGUCCugGGGGCGCcCGc -3' miRNA: 3'- cCCGaaaugCUAGGugCCUCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 56867 | 0.69 | 0.879513 |
Target: 5'- cGGGCccacCGAUCCACcaGAGCGCg-- -3' miRNA: 3'- -CCCGaaauGCUAGGUGc-CUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49498 | 0.71 | 0.788338 |
Target: 5'- gGGGCgggucgGCGGUUCGCGGguGGCGC-CGu -3' miRNA: 3'- -CCCGaaa---UGCUAGGUGCC--UCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49101 | 0.7 | 0.815401 |
Target: 5'- cGGCUc-GCGAacCCGCGGGGCGCa-- -3' miRNA: 3'- cCCGAaaUGCUa-GGUGCCUCGCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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