Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5986 | 5' | -53.9 | NC_001806.1 | + | 147692 | 0.69 | 0.849064 |
Target: 5'- gGGGCgcggggGCGggCCcCGGAggcgGCGCUCGc -3' miRNA: 3'- -CCCGaaa---UGCuaGGuGCCU----CGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 35507 | 0.7 | 0.840931 |
Target: 5'- aGGGCgagGCG-UCggaGCGGGGCcGCUCAc -3' miRNA: 3'- -CCCGaaaUGCuAGg--UGCCUCG-CGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 25907 | 0.7 | 0.832605 |
Target: 5'- cGGGCg--GCGGUCCggGCGGcguGCGCg-- -3' miRNA: 3'- -CCCGaaaUGCUAGG--UGCCu--CGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49101 | 0.7 | 0.815401 |
Target: 5'- cGGCUc-GCGAacCCGCGGGGCGCa-- -3' miRNA: 3'- cCCGAaaUGCUa-GGUGCCUCGCGagu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 15847 | 0.7 | 0.815401 |
Target: 5'- cGGGCcccUUUugGggCCGCGGGGgGC-CGa -3' miRNA: 3'- -CCCG---AAAugCuaGGUGCCUCgCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 49498 | 0.71 | 0.788338 |
Target: 5'- gGGGCgggucgGCGGUUCGCGGguGGCGC-CGu -3' miRNA: 3'- -CCCGaaa---UGCUAGGUGCC--UCGCGaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 147639 | 0.71 | 0.788338 |
Target: 5'- gGGGCacacgGCGcgcGUCCGCGGGGCGggCGg -3' miRNA: 3'- -CCCGaaa--UGC---UAGGUGCCUCGCgaGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 137661 | 0.71 | 0.787413 |
Target: 5'- aGGGCgcccugacGCGGUuggccccggccacCCACGGGGCGCUg- -3' miRNA: 3'- -CCCGaaa-----UGCUA-------------GGUGCCUCGCGAgu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 43586 | 0.72 | 0.740483 |
Target: 5'- gGGGCggcugACaaGUCCGCGGAuGUGCUCGu -3' miRNA: 3'- -CCCGaaa--UGc-UAGGUGCCU-CGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 86357 | 0.72 | 0.710533 |
Target: 5'- cGGGCaggggucGCGccagccacuccUCCGCGGGGCGCUCGg -3' miRNA: 3'- -CCCGaaa----UGCu----------AGGUGCCUCGCGAGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 2743 | 0.73 | 0.649042 |
Target: 5'- cGGGCcggcGCGAcacggCCACGGGGCGCgggCGg -3' miRNA: 3'- -CCCGaaa-UGCUa----GGUGCCUCGCGa--GU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 11320 | 0.74 | 0.638694 |
Target: 5'- uGGGUgucgUGgGGUCCACGGGGgGCgUCGg -3' miRNA: 3'- -CCCGaa--AUgCUAGGUGCCUCgCG-AGU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 34315 | 0.74 | 0.60765 |
Target: 5'- gGGGCg--GCGcgCCggACGGGGCGCUgGa -3' miRNA: 3'- -CCCGaaaUGCuaGG--UGCCUCGCGAgU- -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 151448 | 0.75 | 0.536198 |
Target: 5'- gGGGCggcgGCGGggcggCCGCGGGcGCGCUCc -3' miRNA: 3'- -CCCGaaa-UGCUa----GGUGCCU-CGCGAGu -5' |
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5986 | 5' | -53.9 | NC_001806.1 | + | 112431 | 0.79 | 0.354411 |
Target: 5'- cGGGCggc-CGGUCgACGGGGUGCUCGu -3' miRNA: 3'- -CCCGaaauGCUAGgUGCCUCGCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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