miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 3' -58.4 NC_001806.1 + 112011 0.77 0.246295
Target:  5'- cGCCGCCuUCAGCCUggccaccgagGCCAuCGCCCu- -3'
miRNA:   3'- -UGGCGGuAGUCGGAa---------UGGU-GCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 36860 0.77 0.246295
Target:  5'- cCCGCCAUCuGCCgugacCCACGCCCc- -3'
miRNA:   3'- uGGCGGUAGuCGGaau--GGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 80282 0.77 0.251017
Target:  5'- cGCCGCCccacuacacggCAGCCggugGCCACGCCCa- -3'
miRNA:   3'- -UGGCGGua---------GUCGGaa--UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 26390 0.75 0.30377
Target:  5'- cGCCGCCAUCgcGGCCcccGCCGCcCCCGGc -3'
miRNA:   3'- -UGGCGGUAG--UCGGaa-UGGUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 33419 0.75 0.317864
Target:  5'- cCCGCgAUCGGCacgGCCGCGCCCc- -3'
miRNA:   3'- uGGCGgUAGUCGgaaUGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 53427 0.75 0.325094
Target:  5'- uGCUGCCGUC-GCUagACCACGCCCc- -3'
miRNA:   3'- -UGGCGGUAGuCGGaaUGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 22683 0.75 0.332446
Target:  5'- cGCCGCCcuggggCGGCUguccGCCGCGCCCGc -3'
miRNA:   3'- -UGGCGGua----GUCGGaa--UGGUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 2255 0.75 0.339919
Target:  5'- gGCCGCCAgcaggcaggaCAGCCc-GCCGCGCUCGGc -3'
miRNA:   3'- -UGGCGGUa---------GUCGGaaUGGUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 116428 0.74 0.363061
Target:  5'- gACC-CCAUCAGCCUcguCC-CGCCCGu -3'
miRNA:   3'- -UGGcGGUAGUCGGAau-GGuGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 23255 0.74 0.363061
Target:  5'- gGCCGCCG-CcGCCUccGCCGCGCCgCGGg -3'
miRNA:   3'- -UGGCGGUaGuCGGAa-UGGUGCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 90556 0.73 0.387273
Target:  5'- -gCGCC-UCGGCCUggacccggACCGCGCCCu- -3'
miRNA:   3'- ugGCGGuAGUCGGAa-------UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 150927 0.73 0.395577
Target:  5'- gACCGCC-UCGGCCUccGCCacccgGCGCCgGAa -3'
miRNA:   3'- -UGGCGGuAGUCGGAa-UGG-----UGCGGgCU- -5'
5988 3' -58.4 NC_001806.1 + 131869 0.73 0.412524
Target:  5'- gGCCGUCGUggCGGCCgc-CCGCGCCgCGAc -3'
miRNA:   3'- -UGGCGGUA--GUCGGaauGGUGCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 2932 0.73 0.421164
Target:  5'- cGCCGCCuccgggCGGCCggGCCGgGCCgGGa -3'
miRNA:   3'- -UGGCGGua----GUCGGaaUGGUgCGGgCU- -5'
5988 3' -58.4 NC_001806.1 + 1386 0.72 0.47519
Target:  5'- cGCCGCCGcCAGCacggUGCCGCugcgGCCCGu -3'
miRNA:   3'- -UGGCGGUaGUCGga--AUGGUG----CGGGCu -5'
5988 3' -58.4 NC_001806.1 + 46430 0.72 0.47519
Target:  5'- cGCCGCgGUCGggcGCCUggcgGCCAUgcauGCCCGGa -3'
miRNA:   3'- -UGGCGgUAGU---CGGAa---UGGUG----CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 112336 0.72 0.484531
Target:  5'- cACCGCCGggaGGCCgucgagGCCugGCUCGu -3'
miRNA:   3'- -UGGCGGUag-UCGGaa----UGGugCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 22614 0.72 0.484531
Target:  5'- cGCCGCCGUC-GCC--GCCGcCGCaCCGGg -3'
miRNA:   3'- -UGGCGGUAGuCGGaaUGGU-GCG-GGCU- -5'
5988 3' -58.4 NC_001806.1 + 2318 0.71 0.522722
Target:  5'- cCCGCCGcCGGCCagguCCuCGCCCGGc -3'
miRNA:   3'- uGGCGGUaGUCGGaau-GGuGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 23471 0.71 0.532456
Target:  5'- gGCCGCCG-CGGCgCagGCC-CGCCCGc -3'
miRNA:   3'- -UGGCGGUaGUCG-GaaUGGuGCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.