miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 3' -58.4 NC_001806.1 + 4 0.69 0.652564
Target:  5'- cGCCGCCA-CcGCUUUaaaggGCCGCGCgCGAc -3'
miRNA:   3'- -UGGCGGUaGuCGGAA-----UGGUGCGgGCU- -5'
5988 3' -58.4 NC_001806.1 + 295 0.67 0.760741
Target:  5'- cCCGCUcccgCGGCCccgccccCCACGCCCGc -3'
miRNA:   3'- uGGCGGua--GUCGGaau----GGUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 348 0.69 0.612155
Target:  5'- gACCGCCGcCcGCCUUuuuugcgcgcGCgCGCGCCCGc -3'
miRNA:   3'- -UGGCGGUaGuCGGAA----------UG-GUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 1286 0.66 0.819955
Target:  5'- cGCCGCCGUCGucuucgucccaggcGCCUUcCCAguccacaacuuccCGCCgCGGg -3'
miRNA:   3'- -UGGCGGUAGU--------------CGGAAuGGU-------------GCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 1386 0.72 0.47519
Target:  5'- cGCCGCCGcCAGCacggUGCCGCugcgGCCCGu -3'
miRNA:   3'- -UGGCGGUaGUCGga--AUGGUG----CGGGCu -5'
5988 3' -58.4 NC_001806.1 + 1716 0.67 0.770085
Target:  5'- gGCCGCCGccCGGCCgu-CCAgCGCCgGc -3'
miRNA:   3'- -UGGCGGUa-GUCGGaauGGU-GCGGgCu -5'
5988 3' -58.4 NC_001806.1 + 2255 0.75 0.339919
Target:  5'- gGCCGCCAgcaggcaggaCAGCCc-GCCGCGCUCGGc -3'
miRNA:   3'- -UGGCGGUa---------GUCGGaaUGGUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 2318 0.71 0.522722
Target:  5'- cCCGCCGcCGGCCagguCCuCGCCCGGc -3'
miRNA:   3'- uGGCGGUaGUCGGaau-GGuGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 2405 0.68 0.672704
Target:  5'- gGCCGCCAUgCGGCgc-AgCGgGCCCGAg -3'
miRNA:   3'- -UGGCGGUA-GUCGgaaUgGUgCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 2500 0.69 0.652564
Target:  5'- cGCCGCCGcacgCGGCCUggGCgGCgggggcggGCCCGGc -3'
miRNA:   3'- -UGGCGGUa---GUCGGAa-UGgUG--------CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 2932 0.73 0.421164
Target:  5'- cGCCGCCuccgggCGGCCggGCCGgGCCgGGa -3'
miRNA:   3'- -UGGCGGua----GUCGGaaUGGUgCGGgCU- -5'
5988 3' -58.4 NC_001806.1 + 3457 0.69 0.612155
Target:  5'- gACgGCCAcgcggcCGGCCUgggcGCgGCGCCCGGc -3'
miRNA:   3'- -UGgCGGUa-----GUCGGAa---UGgUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 4160 0.69 0.612155
Target:  5'- gGCCGCCGUaCAGCac--CCGC-CCCGGg -3'
miRNA:   3'- -UGGCGGUA-GUCGgaauGGUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 4332 0.7 0.552109
Target:  5'- cACCGCCGcgCgGGCCcgGCgGCGCUCGAu -3'
miRNA:   3'- -UGGCGGUa-G-UCGGaaUGgUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 4374 0.66 0.77931
Target:  5'- gGCCGCgGg-GGuCCUcGCCGcCGCCCGGg -3'
miRNA:   3'- -UGGCGgUagUC-GGAaUGGU-GCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 4451 0.69 0.652564
Target:  5'- uCCGCCcgggggCuGCCggcGCCGCGCUCGAc -3'
miRNA:   3'- uGGCGGua----GuCGGaa-UGGUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 4630 0.68 0.672704
Target:  5'- gGCCGCCAcCGGCCgugACgACGUCUc- -3'
miRNA:   3'- -UGGCGGUaGUCGGaa-UGgUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 5591 0.68 0.68273
Target:  5'- gGCaCGCCGggGGCCcgugGCCGCGgCCCGu -3'
miRNA:   3'- -UG-GCGGUagUCGGaa--UGGUGC-GGGCu -5'
5988 3' -58.4 NC_001806.1 + 5907 0.69 0.662646
Target:  5'- gGCCGCCc---GCCUUGCCGCcCCCc- -3'
miRNA:   3'- -UGGCGGuaguCGGAAUGGUGcGGGcu -5'
5988 3' -58.4 NC_001806.1 + 7817 0.66 0.788406
Target:  5'- gGCCGCCAcgcgCGGCUgguCCACaCCCa- -3'
miRNA:   3'- -UGGCGGUa---GUCGGaauGGUGcGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.