miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 3' -58.4 NC_001806.1 + 14040 0.66 0.812256
Target:  5'- uACCGCgAUCuuuauugggGGCCgggGCCACggauuuccugguuaGCCCGGu -3'
miRNA:   3'- -UGGCGgUAG---------UCGGaa-UGGUG--------------CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 20858 0.7 0.592009
Target:  5'- gACCGCCAgagacagaccgUCAGaCgCUcGCCGCGCCgGGa -3'
miRNA:   3'- -UGGCGGU-----------AGUC-G-GAaUGGUGCGGgCU- -5'
5988 3' -58.4 NC_001806.1 + 21416 0.68 0.702651
Target:  5'- gACC-CCG-CGGCCUcGCCGC-CCCGGa -3'
miRNA:   3'- -UGGcGGUaGUCGGAaUGGUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 21572 0.68 0.702651
Target:  5'- gACCGCCu---GUC--GCCGCGCCCGc -3'
miRNA:   3'- -UGGCGGuaguCGGaaUGGUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 22114 0.67 0.751285
Target:  5'- aGCCGCCcg-GGCCUcuggGggGCGCCCGAg -3'
miRNA:   3'- -UGGCGGuagUCGGAa---UggUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 22506 0.66 0.797364
Target:  5'- cCUGCUgacCAGCCUgcGCCGCGCCUa- -3'
miRNA:   3'- uGGCGGua-GUCGGAa-UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 22614 0.72 0.484531
Target:  5'- cGCCGCCGUC-GCC--GCCGcCGCaCCGGg -3'
miRNA:   3'- -UGGCGGUAGuCGGaaUGGU-GCG-GGCU- -5'
5988 3' -58.4 NC_001806.1 + 22683 0.75 0.332446
Target:  5'- cGCCGCCcuggggCGGCUguccGCCGCGCCCGc -3'
miRNA:   3'- -UGGCGGua----GUCGGaa--UGGUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 23078 0.66 0.806178
Target:  5'- gGCCGCCGUgCGcGCCgugaGCCugGUcgCCGGg -3'
miRNA:   3'- -UGGCGGUA-GU-CGGaa--UGGugCG--GGCU- -5'
5988 3' -58.4 NC_001806.1 + 23255 0.74 0.363061
Target:  5'- gGCCGCCG-CcGCCUccGCCGCGCCgCGGg -3'
miRNA:   3'- -UGGCGGUaGuCGGAa-UGGUGCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 23471 0.71 0.532456
Target:  5'- gGCCGCCG-CGGCgCagGCC-CGCCCGc -3'
miRNA:   3'- -UGGCGGUaGUCG-GaaUGGuGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 23798 0.66 0.814837
Target:  5'- gGCCGCCGggGGCCgccucuuugGCCcccugcGCGCCuCGGg -3'
miRNA:   3'- -UGGCGGUagUCGGaa-------UGG------UGCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 24533 0.67 0.770085
Target:  5'- gACgGCCGggcggCGGCCUcggggACCaccgacgccaugGCGCCCGGc -3'
miRNA:   3'- -UGgCGGUa----GUCGGAa----UGG------------UGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 26390 0.75 0.30377
Target:  5'- cGCCGCCAUCgcGGCCcccGCCGCcCCCGGc -3'
miRNA:   3'- -UGGCGGUAG--UCGGaa-UGGUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 26498 0.68 0.712529
Target:  5'- aGCgCGCCcgCGGCCgccccGCCGcCGCCCc- -3'
miRNA:   3'- -UG-GCGGuaGUCGGaa---UGGU-GCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 26671 0.7 0.592009
Target:  5'- cGCCGCCcccCGGCCccgGCCcccacCGCCCGGc -3'
miRNA:   3'- -UGGCGGua-GUCGGaa-UGGu----GCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 26754 0.66 0.788406
Target:  5'- uCCGCCuUCcGCCgcGCCuCGCCCu- -3'
miRNA:   3'- uGGCGGuAGuCGGaaUGGuGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 27042 0.68 0.68273
Target:  5'- gGCgGUCAUCgGGCCgUGCCugGgGCCCGAg -3'
miRNA:   3'- -UGgCGGUAG-UCGGaAUGG--UgCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 27357 0.67 0.732076
Target:  5'- uACCGCCcaAUgGGCCggGCCGCccacuuCCCGGu -3'
miRNA:   3'- -UGGCGG--UAgUCGGaaUGGUGc-----GGGCU- -5'
5988 3' -58.4 NC_001806.1 + 30254 0.68 0.712529
Target:  5'- cGCCGCCuccggggccCGGCCc--CCGCGCCCc- -3'
miRNA:   3'- -UGGCGGua-------GUCGGaauGGUGCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.