miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 3' -58.4 NC_001806.1 + 113513 0.66 0.794692
Target:  5'- gGCCGCCAUacaCGGCagcgagcacgucuuCUgcgcCCugGCCCGGc -3'
miRNA:   3'- -UGGCGGUA---GUCG--------------GAau--GGugCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 133277 0.66 0.793798
Target:  5'- -aCGCCGUcCGGCUgcggcacccacugUGCCugGCCCu- -3'
miRNA:   3'- ugGCGGUA-GUCGGa------------AUGGugCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 26754 0.66 0.788406
Target:  5'- uCCGCCuUCcGCCgcGCCuCGCCCu- -3'
miRNA:   3'- uGGCGGuAGuCGGaaUGGuGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 74272 0.66 0.788406
Target:  5'- cGCCGCCAUUcccGCC---CCGCcCCCGAu -3'
miRNA:   3'- -UGGCGGUAGu--CGGaauGGUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 91151 0.66 0.788406
Target:  5'- gGCCGCUGUUcgagGGCCaggacacgGCCGCGgCCCGc -3'
miRNA:   3'- -UGGCGGUAG----UCGGaa------UGGUGC-GGGCu -5'
5988 3' -58.4 NC_001806.1 + 147516 0.66 0.788406
Target:  5'- cGCCGCgGgagGGCCcgUGCCcacccuccACGCCCGGc -3'
miRNA:   3'- -UGGCGgUag-UCGGa-AUGG--------UGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 7817 0.66 0.788406
Target:  5'- gGCCGCCAcgcgCGGCUgguCCACaCCCa- -3'
miRNA:   3'- -UGGCGGUa---GUCGGaauGGUGcGGGcu -5'
5988 3' -58.4 NC_001806.1 + 33132 0.66 0.788406
Target:  5'- gACCGCCG-CGGUCggggGCCccuCGuCCCGGg -3'
miRNA:   3'- -UGGCGGUaGUCGGaa--UGGu--GC-GGGCU- -5'
5988 3' -58.4 NC_001806.1 + 81347 0.66 0.788406
Target:  5'- gGCCGCaaccaggCGGCCgggGCguCGCCCGc -3'
miRNA:   3'- -UGGCGgua----GUCGGaa-UGguGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 128226 0.66 0.788406
Target:  5'- uACCGCggCGUCGGCCgUGCacaggaagACGCCCa- -3'
miRNA:   3'- -UGGCG--GUAGUCGGaAUGg-------UGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 147283 0.66 0.782964
Target:  5'- gGCCGCCgaggacgucagggggGUCccgGGCCcacccugGCCGCGCCCc- -3'
miRNA:   3'- -UGGCGG---------------UAG---UCGGaa-----UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 125558 0.66 0.77931
Target:  5'- uCCGCUAUCu-CCUgggggcacCCACGCCCGc -3'
miRNA:   3'- uGGCGGUAGucGGAau------GGUGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 4374 0.66 0.77931
Target:  5'- gGCCGCgGg-GGuCCUcGCCGcCGCCCGGg -3'
miRNA:   3'- -UGGCGgUagUC-GGAaUGGU-GCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 60026 0.66 0.77931
Target:  5'- aGCCGCg--CuGCCguccGCCGCGCCCu- -3'
miRNA:   3'- -UGGCGguaGuCGGaa--UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 135579 0.66 0.77931
Target:  5'- gGCCGCCAggUCGGCCgcgcGCUgcugGCGCuCCa- -3'
miRNA:   3'- -UGGCGGU--AGUCGGaa--UGG----UGCG-GGcu -5'
5988 3' -58.4 NC_001806.1 + 103032 0.66 0.77931
Target:  5'- cGCCGCCGUCuccagcGCCU--CCaggGCGCCUGc -3'
miRNA:   3'- -UGGCGGUAGu-----CGGAauGG---UGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 98161 0.67 0.770085
Target:  5'- aGCCGCCcccugGUCAGCUUUcgguacgaagACCAgGgCCCGu -3'
miRNA:   3'- -UGGCGG-----UAGUCGGAA----------UGGUgC-GGGCu -5'
5988 3' -58.4 NC_001806.1 + 1716 0.67 0.770085
Target:  5'- gGCCGCCGccCGGCCgu-CCAgCGCCgGc -3'
miRNA:   3'- -UGGCGGUa-GUCGGaauGGU-GCGGgCu -5'
5988 3' -58.4 NC_001806.1 + 24533 0.67 0.770085
Target:  5'- gACgGCCGggcggCGGCCUcggggACCaccgacgccaugGCGCCCGGc -3'
miRNA:   3'- -UGgCGGUa----GUCGGAa----UGG------------UGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 67771 0.67 0.769156
Target:  5'- uACCGCCuccgguggguuguGUUGGCCga--CugGCCCGGc -3'
miRNA:   3'- -UGGCGG-------------UAGUCGGaaugGugCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.