miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 3' -64.5 NC_001806.1 + 21136 0.81 0.064683
Target:  5'- cCCCGGcUCCCCGGGCCCcaccgacgGGCCgccgCCCa -3'
miRNA:   3'- -GGGUC-AGGGGCCCGGG--------UCGGaa--GGGc -5'
5989 3' -64.5 NC_001806.1 + 690 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 626 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 658 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 7405 0.79 0.089595
Target:  5'- cCCCGGucUCCCCGGGagcCCCGGUCUcCCCGg -3'
miRNA:   3'- -GGGUC--AGGGGCCC---GGGUCGGAaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 26414 0.78 0.101423
Target:  5'- cCCCGGcCgCCCGGGCCCAcgggcGCCgUCCCa -3'
miRNA:   3'- -GGGUCaG-GGGCCCGGGU-----CGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 72589 0.77 0.120176
Target:  5'- gCCCAGUCgccgccaccgaCCCGGGCCCgucgcgacgacagGGCCUccgagacaUCCCGg -3'
miRNA:   3'- -GGGUCAG-----------GGGCCCGGG-------------UCGGA--------AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 120881 0.76 0.129613
Target:  5'- gCCUGGUcCCCCGGGgaccuugcCCCGGCCggaUUCCCGg -3'
miRNA:   3'- -GGGUCA-GGGGCCC--------GGGUCGG---AAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 150263 0.76 0.1328
Target:  5'- gUCGGUgCCCCGGGgcuuCCC-GCCUUCCCGa -3'
miRNA:   3'- gGGUCA-GGGGCCC----GGGuCGGAAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 56522 0.76 0.13606
Target:  5'- -gCAGg-CCCGGGCCCGGCgUUCCCc -3'
miRNA:   3'- ggGUCagGGGCCCGGGUCGgAAGGGc -5'
5989 3' -64.5 NC_001806.1 + 5832 0.76 0.139393
Target:  5'- gCCCGuuggccGUCCCCGGGCCCc-CCggUCCCGc -3'
miRNA:   3'- -GGGU------CAGGGGCCCGGGucGGa-AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 112885 0.76 0.139393
Target:  5'- aCCUAGUCCCCGccCCCGGCCa-CCCGg -3'
miRNA:   3'- -GGGUCAGGGGCccGGGUCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 27073 0.76 0.146284
Target:  5'- gCCC-GUgCCCGGGCCCuggcccgcggAGCCggCCCGg -3'
miRNA:   3'- -GGGuCAgGGGCCCGGG----------UCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 26678 0.74 0.177049
Target:  5'- cCCCGG-CCCCGGcccccaccGCCCGGCgUgggCCCGg -3'
miRNA:   3'- -GGGUCaGGGGCC--------CGGGUCGgAa--GGGC- -5'
5989 3' -64.5 NC_001806.1 + 143535 0.74 0.185593
Target:  5'- aCCCGG-CCCgGcccGGCCCGGCCcggCCCGg -3'
miRNA:   3'- -GGGUCaGGGgC---CCGGGUCGGaa-GGGC- -5'
5989 3' -64.5 NC_001806.1 + 32984 0.74 0.185593
Target:  5'- gCCGGggCCCCGGGCCgGGCCg-CCaCGg -3'
miRNA:   3'- gGGUCa-GGGGCCCGGgUCGGaaGG-GC- -5'
5989 3' -64.5 NC_001806.1 + 72883 0.74 0.19909
Target:  5'- uCCCGGUUggucggcaCCGGGCacgcuacucggCCGGCCUUCCCa -3'
miRNA:   3'- -GGGUCAGg-------GGCCCG-----------GGUCGGAAGGGc -5'
5989 3' -64.5 NC_001806.1 + 144956 0.73 0.203775
Target:  5'- gCCGGcCCCCGuggcGGCCCGGCCcggggcCCCGg -3'
miRNA:   3'- gGGUCaGGGGC----CCGGGUCGGaa----GGGC- -5'
5989 3' -64.5 NC_001806.1 + 73208 0.73 0.203775
Target:  5'- gCCCgAGcCCCCGGGCgCAGaCCUcgCCCa -3'
miRNA:   3'- -GGG-UCaGGGGCCCGgGUC-GGAa-GGGc -5'
5989 3' -64.5 NC_001806.1 + 49358 0.73 0.208556
Target:  5'- uCCCGGcagcgCCCCGGGCCCGauGCgg-CCCGu -3'
miRNA:   3'- -GGGUCa----GGGGCCCGGGU--CGgaaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.