miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 3' -64.5 NC_001806.1 + 597 0.67 0.512312
Target:  5'- gCCCccUCCCCaGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGucAGGGGcCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 626 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 658 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 690 0.8 0.073356
Target:  5'- cCCCAGcccUCCCCGGcCCCAGCCcUCCCc -3'
miRNA:   3'- -GGGUC---AGGGGCCcGGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 1550 0.66 0.568179
Target:  5'- gCCCGcgCCaCCGGGCCgGGCCggCgCGc -3'
miRNA:   3'- -GGGUcaGG-GGCCCGGgUCGGaaGgGC- -5'
5989 3' -64.5 NC_001806.1 + 3369 0.67 0.494181
Target:  5'- cCCCGGccagCCCCGGGa-CGGCCgccaggUCgCCGu -3'
miRNA:   3'- -GGGUCa---GGGGCCCggGUCGGa-----AG-GGC- -5'
5989 3' -64.5 NC_001806.1 + 4193 0.69 0.361736
Target:  5'- gCCCGG-CgCCGGGCCaCGGCUc-CCCGc -3'
miRNA:   3'- -GGGUCaGgGGCCCGG-GUCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 4741 0.68 0.408491
Target:  5'- cCCCGGg-CCgGGGCCCGGUCg--CCGg -3'
miRNA:   3'- -GGGUCagGGgCCCGGGUCGGaagGGC- -5'
5989 3' -64.5 NC_001806.1 + 5776 0.71 0.30541
Target:  5'- -gCGGggCCCGGGCCCcGaCUUCCCGg -3'
miRNA:   3'- ggGUCagGGGCCCGGGuCgGAAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 5832 0.76 0.139393
Target:  5'- gCCCGuuggccGUCCCCGGGCCCc-CCggUCCCGc -3'
miRNA:   3'- -GGGU------CAGGGGCCCGGGucGGa-AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 7025 0.66 0.577657
Target:  5'- cCCCGG-CCCCaguuGGGCCgGGCga-CCCa -3'
miRNA:   3'- -GGGUCaGGGG----CCCGGgUCGgaaGGGc -5'
5989 3' -64.5 NC_001806.1 + 7279 0.67 0.467553
Target:  5'- cCCCGGgagCCCCGGGuUCCGcGaCCacCCCGa -3'
miRNA:   3'- -GGGUCa--GGGGCCC-GGGU-C-GGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 7405 0.79 0.089595
Target:  5'- cCCCGGucUCCCCGGGagcCCCGGUCUcCCCGg -3'
miRNA:   3'- -GGGUC--AGGGGCCC---GGGUCGGAaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 16525 0.69 0.400439
Target:  5'- uCCCuGUCCauGGcGUCCAGCuCUUCCgCGg -3'
miRNA:   3'- -GGGuCAGGggCC-CGGGUCG-GAAGG-GC- -5'
5989 3' -64.5 NC_001806.1 + 20063 0.68 0.424894
Target:  5'- uCCCGGUCCgCGuGCUccgCAGCCgcUCCCGu -3'
miRNA:   3'- -GGGUCAGGgGCcCGG---GUCGGa-AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 20163 0.69 0.39249
Target:  5'- cCCCcGcCgCCCGGGCCC-GCC--CCCGg -3'
miRNA:   3'- -GGGuCaG-GGGCCCGGGuCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 20472 0.7 0.339795
Target:  5'- gUCGGggCCCGGGCCCcGCCcccugCCCGu -3'
miRNA:   3'- gGGUCagGGGCCCGGGuCGGaa---GGGC- -5'
5989 3' -64.5 NC_001806.1 + 21136 0.81 0.064683
Target:  5'- cCCCGGcUCCCCGGGCCCcaccgacgGGCCgccgCCCa -3'
miRNA:   3'- -GGGUC-AGGGGCCCGGG--------UCGGaa--GGGc -5'
5989 3' -64.5 NC_001806.1 + 21412 0.68 0.408491
Target:  5'- gCCCGa-CCCCGcGGCCUcGCCgcCCCGg -3'
miRNA:   3'- -GGGUcaGGGGC-CCGGGuCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 22059 0.7 0.325712
Target:  5'- gCCCGG-CgCCGGGCCCccGCC--CCCGg -3'
miRNA:   3'- -GGGUCaGgGGCCCGGGu-CGGaaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.