Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5989 | 5' | -51 | NC_001806.1 | + | 142202 | 0.69 | 0.967192 |
Target: 5'- cGUgGuGAGGGgcuucggcuGCAGGCCCGcuucAUCGUCCg -3' miRNA: 3'- -CAgCuCUUCC---------UGUUUGGGU----UGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 114020 | 0.69 | 0.967192 |
Target: 5'- ----cGggGGGCGGACUgGACCGUgCa -3' miRNA: 3'- cagcuCuuCCUGUUUGGgUUGGCAgG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 71403 | 0.69 | 0.970282 |
Target: 5'- cGUCGAGGAcGACGAGaugauCCCGgaggacACCGUCg -3' miRNA: 3'- -CAGCUCUUcCUGUUU-----GGGU------UGGCAGg -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 20563 | 0.69 | 0.970282 |
Target: 5'- -gCGGGGcGGGGCGcgGACCCAcCCGcCCu -3' miRNA: 3'- caGCUCU-UCCUGU--UUGGGUuGGCaGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 150493 | 0.69 | 0.970282 |
Target: 5'- -gCGGGAAGGGCG-GCCgGgGCCGcCCa -3' miRNA: 3'- caGCUCUUCCUGUuUGGgU-UGGCaGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 43725 | 0.69 | 0.970282 |
Target: 5'- gGUCGGGggGGAUugggguGACCgAGgCGcCCu -3' miRNA: 3'- -CAGCUCuuCCUGu-----UUGGgUUgGCaGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 67421 | 0.68 | 0.972317 |
Target: 5'- cGUCGuuGggGGuCAGcgcCCCAgggggcgcgucuguGCCGUCCa -3' miRNA: 3'- -CAGCu-CuuCCuGUUu--GGGU--------------UGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 119865 | 0.68 | 0.973157 |
Target: 5'- -gUGGGgcGGGCGAcgcGCCCGcccuccgcuGCUGUCCu -3' miRNA: 3'- caGCUCuuCCUGUU---UGGGU---------UGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 119208 | 0.68 | 0.975826 |
Target: 5'- -cCGcGAAGGAgGcugcGGCCCAcCUGUCCa -3' miRNA: 3'- caGCuCUUCCUgU----UUGGGUuGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 4583 | 0.68 | 0.975826 |
Target: 5'- -aCGAcGAGGACGagGACCCGGa-GUCCg -3' miRNA: 3'- caGCUcUUCCUGU--UUGGGUUggCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 4421 | 0.68 | 0.975826 |
Target: 5'- --aGAGggGGGguGGCCCGggcgggggcGgCGUCCg -3' miRNA: 3'- cagCUCuuCCUguUUGGGU---------UgGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 88411 | 0.68 | 0.977575 |
Target: 5'- uUUGAGAcgguaccagccgaaGGuGACGAACCCGggGuuGUCCa -3' miRNA: 3'- cAGCUCU--------------UC-CUGUUUGGGU--UggCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 5876 | 0.68 | 0.978295 |
Target: 5'- -cCGGGAccaacGGGACGgcgggcGGCCCAaggGCCGcCCg -3' miRNA: 3'- caGCUCU-----UCCUGU------UUGGGU---UGGCaGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 7003 | 0.68 | 0.978295 |
Target: 5'- cUCGAGAuGaGcCAGACCCAACCc-CCg -3' miRNA: 3'- cAGCUCUuC-CuGUUUGGGUUGGcaGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 126884 | 0.68 | 0.978295 |
Target: 5'- -cCGGGGcucucGGGGCcgcaGGACCCAGCaaggCGUCCa -3' miRNA: 3'- caGCUCU-----UCCUG----UUUGGGUUG----GCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 59996 | 0.68 | 0.980573 |
Target: 5'- cUCGGGGacccggGGGACGgccggguccggAGCCgCGcuGCCGUCCg -3' miRNA: 3'- cAGCUCU------UCCUGU-----------UUGG-GU--UGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 20919 | 0.68 | 0.982667 |
Target: 5'- -gCGGGAGGGGgA---UCGGCCGUCCc -3' miRNA: 3'- caGCUCUUCCUgUuugGGUUGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 144813 | 0.67 | 0.984587 |
Target: 5'- -cCGGGAcgaGGGGCccccGACCgCGGCgGUCCg -3' miRNA: 3'- caGCUCU---UCCUGu---UUGG-GUUGgCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 133243 | 0.67 | 0.986172 |
Target: 5'- aUCGAGAcggccguGGGAgccgugcuUAGGgCCAacGCCGUCCg -3' miRNA: 3'- cAGCUCU-------UCCU--------GUUUgGGU--UGGCAGG- -5' |
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5989 | 5' | -51 | NC_001806.1 | + | 5495 | 0.67 | 0.98634 |
Target: 5'- -gCGGGAAGGAgGAGCagcggaGGCCG-CCg -3' miRNA: 3'- caGCUCUUCCUgUUUGgg----UUGGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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